NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300022390

3300022390: Goat fecal pellet fungal communities from Santa Barbara, California, USA ? diluted pellet 3 (v2)



Overview

Basic Information
IMG/M Taxon OID3300022390 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118397 | Gp0213396 | Ga0216338
Sample NameGoat fecal pellet fungal communities from Santa Barbara, California, USA ? diluted pellet 3 (v2)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size219732711
Sequencing Scaffolds7
Novel Protein Genes7
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
Not Available4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → unclassified Rikenellaceae → Rikenellaceae bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDetermining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: California
CoordinatesLat. (o)34.4204Long. (o)-119.6671Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041521Metagenome159Y
F044232Metagenome154Y
F058575Metagenome / Metatranscriptome134Y
F072921Metagenome / Metatranscriptome120Y
F100397Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0216338_1012953All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1102Open in IMG/M
Ga0216338_1020023Not Available973Open in IMG/M
Ga0216338_1028486All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron868Open in IMG/M
Ga0216338_1032557Not Available831Open in IMG/M
Ga0216338_1067523Not Available650Open in IMG/M
Ga0216338_1068498All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → unclassified Rikenellaceae → Rikenellaceae bacterium647Open in IMG/M
Ga0216338_1107741Not Available557Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0216338_1012953Ga0216338_10129534F041521KNSYNNTATIYMGGFLSFSNTGAKTTLENCLFAGKFERGANLTDEARLGAFGTLRSVNAIKNCYYLADDGLEAVHSDSDLDTNSDNVEITPVTEEELRGDTIVTKLGECWTRGENYPVIK
Ga0216338_1020023Ga0216338_10200231F100397MMKKLIAIIALSLSLILCLTACGSKMPYDLSGTASIELHAYDTDSTEPFAKIVVDGEDVATIVEMFSSLKLKEMKYTEPSINGYDFWFKDADGNEIAKLSLPYGPSPWVVVKGTAYQDVNGGVDLNYLAQLVDVTVSAGPMQPEDGADHNAPVEPLFYKSAPGLSVQHDGQSVRALKGTSSWTYMNPDGTSTGIEADSMHPLDAKEYMPVLPAVEGEVSLVFKTAPDEVTVKAWPVSEWGNLD
Ga0216338_1028486Ga0216338_10284862F041521GGFIGKIQENTSEVTIRNCAAYGTIKTNYAKNSFNNTPTIYMGGFLSFSNTGAKTTLENCLFAGKFERGANLTDEARLGAFGTLRSVNAIKNCYYLAHDGLAAVHSDSPLNANSDNVEITAVTEDDLRNNTIATQLGEYWTQGENYPVIRR
Ga0216338_1032557Ga0216338_10325572F044232MKRFISVFLLFLFLLSLFPATAFAAEENDISQFEFPTPKAPNYFIYTDGDASEASHDDLRMIMVADPEVALLAAEYTADSEAFYEKYGLWYFNIAMQYDVSLDGED
Ga0216338_1067523Ga0216338_10675232F072921MKNRLSLHTDRKSASEGEYIEIRWSCDACPDSLHLTIDSGYKCDTIAVADSGSTRIMMSRSKGKTVITLKAVISGKKVTESVEIRIRNSKGTTARTASGISKTKIWKEKMLAKWYVFRAQMKYWWLSQKKWQKALWIALLIIWLGMLIASFMNSPEPKVSSGQVQTAYL
Ga0216338_1068498Ga0216338_10684981F058575AKELLERAEELRRSCDFGDAINVYRAAASAPDATEDIRRKALASVELIQEINGFVNVDLMNP
Ga0216338_1107741Ga0216338_11077412F044232MKKLLSMILSILMIIPLCISGVSAEENDISKFELTAPKAPNYFVYTDGDASEGHHDDLRMIMVADPEVALLAAEYDRDSEAFYKKYGLYSFNLVMQYDVSLD
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