NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300022517

3300022517: Peat soil microbial communities from Stordalen Mire, Sweden - 717 E3 10-14



Overview

Basic Information
IMG/M Taxon OID3300022517 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0131983 | Gp0256468 | Ga0224540
Sample NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 E3 10-14
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size46253604
Sequencing Scaffolds20
Novel Protein Genes21
Associated Families21

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → unclassified Bacteroides → Bacteroides sp.1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1
Not Available12
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA41

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NamePeatland Microbial Communities From Stordalen Mire, Sweden
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → peatland → peat soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3533Long. (o)19.0466Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002448Metagenome / Metatranscriptome558Y
F005728Metagenome / Metatranscriptome392Y
F013930Metagenome / Metatranscriptome267Y
F019814Metagenome / Metatranscriptome227Y
F021446Metagenome / Metatranscriptome219Y
F021450Metagenome219N
F025469Metagenome / Metatranscriptome201Y
F025952Metagenome199Y
F026449Metagenome / Metatranscriptome198Y
F026747Metagenome / Metatranscriptome197Y
F030615Metagenome185Y
F037997Metagenome / Metatranscriptome167Y
F042098Metagenome159Y
F054454Metagenome140Y
F058248Metagenome135Y
F059491Metagenome134Y
F063193Metagenome / Metatranscriptome130N
F072571Metagenome / Metatranscriptome121Y
F086362Metagenome111Y
F086482Metagenome / Metatranscriptome110Y
F100040Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0224540_1000421All Organisms → cellular organisms → Bacteria1699Open in IMG/M
Ga0224540_1000696All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1483Open in IMG/M
Ga0224540_1001058All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → unclassified Bacteroides → Bacteroides sp.1309Open in IMG/M
Ga0224540_1001206All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1249Open in IMG/M
Ga0224540_1001216All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1246Open in IMG/M
Ga0224540_1001499All Organisms → cellular organisms → Bacteria1158Open in IMG/M
Ga0224540_1003859Not Available824Open in IMG/M
Ga0224540_1004240Not Available797Open in IMG/M
Ga0224540_1004342Not Available791Open in IMG/M
Ga0224540_1005838Not Available714Open in IMG/M
Ga0224540_1007068Not Available669Open in IMG/M
Ga0224540_1007427Not Available657Open in IMG/M
Ga0224540_1007706All Organisms → cellular organisms → Bacteria648Open in IMG/M
Ga0224540_1008181Not Available635Open in IMG/M
Ga0224540_1008347Not Available630Open in IMG/M
Ga0224540_1008485All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4626Open in IMG/M
Ga0224540_1008666Not Available622Open in IMG/M
Ga0224540_1012236Not Available548Open in IMG/M
Ga0224540_1013106Not Available534Open in IMG/M
Ga0224540_1014525Not Available515Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0224540_1000421Ga0224540_10004211F086482MPNDLETYRQTLLDLYLRLPDTPCRVSRHDGHLVRQLWERNIPLTTAEAA
Ga0224540_1000696Ga0224540_10006962F025469MRRRFHFPPGEFPDAAVLRLSQWRLVQLHRLDLVLAIYGTIALLAKQRLLPKARRALTEAPRKRSYSLEKLQPPLSKLMNRLLIAQQARQGASNGLF
Ga0224540_1001058Ga0224540_10010581F086362DNTEEPKFHIAIEIGHYNVIPFPVEYLFYTISTFRQPQYCRDTFSPVIAGGNYTFIVDKRPEGMIFQLKRGENILNILPHAFFPDSSQMFFKDVSSYIDRNKGDSLKKVLMVGKGFAGIDKGIHDFNGQVTSLRIIKYTISNTDSGYELKKVRNQHTENQQIIYTAHDNLSANDKFIILKYQFYPYKFEAGELISGGEMQTGETAKMKNDQPANCYLKSSDIGFYKVTICTIDKDNNLLRSSAKPFEIWVYPKEWDFEFY
Ga0224540_1001206Ga0224540_10012062F013930MNSDNKPVRSLREIEMEVLEEGREWTRRRLEQKLQEEANRHGGVFPPQRKKGAPPQAPDDAFAQRRRGR
Ga0224540_1001216Ga0224540_10012162F021450MKKTVSLLALLMLFSIEIQAQVTNVLNNFYTVWVKPAIPIIGGLVLIIGALANMGKVLGESRDYKGFITGIVLYVAVYFCLVGIVAFIMAG
Ga0224540_1001499Ga0224540_10014992F042098KVPAVFKFDYKVTYEINNEEKKTPETVSYYFTKNGDYMSMESAESEKDKDMNFMVSTKDGLMITFGEEPMPKNPNQHRKVLKVMDMHSMMKGSGEAIAALAKSMPKKENTEAEKKKPNDLDNFVKTGKTRQVFGYTAEEYSKEIKKEENGKMHEGTMSAWYAKVDFDPEMMFSLGMGNMGTGGAQSKVNQTHPNNMLGLGLTQKNYLLIEMDFSEKGGKSGTGMKVVSIEKTGFNKSTEGYFIKNYAGMSMMEMMQKENEEK
Ga0224540_1003859Ga0224540_10038592F030615MKKQRFRIISYTKGDTSYYDTKVKTWFGWVSFSVFYKTEILHILSVPSVQKSLAYERIYQYCSIKGYEKKEIEITEINKHESKKWILFQRIYSD
Ga0224540_1004240Ga0224540_10042401F059491MTGLELHEFGLALFTSYFSDQGGDLFAINMNPENGAPHVMIWNLQKILLYVWVKTDLSPNIPVYVPNETHDFITKLSRQYKAIPSFASITISCASKEGNLIPKCGGEYYAVLNEFEEI
Ga0224540_1004342Ga0224540_10043421F072571DALRELLEGDKEAVIAVESIRELLAKLDTIAPVTMVEVALVDLASFDQLFVEVRQ
Ga0224540_1005838Ga0224540_10058381F054454MEKNESLAAPPSKQKRRSRGEWLKEIRSLRDSGLSAKEYATKKGFVFSTLKYWMRVLRNDVEARTKSAVPAFLPVSVLHAATVPSSDAAVMVEVDLANGRRLRMHVRPDTDFKRVSDLLNAVEGGHPC
Ga0224540_1007068Ga0224540_10070682F019814NEKLHKKVSPPFEGGVVGTIDYIIYTEFSFPTGVVDSLISFYLY
Ga0224540_1007427Ga0224540_10074272F063193TTAFAGLSNPKKDSEKPAVLNTREIKLSNEELSRMTRRAEIDNLGKTNLLNNESSSSSKNLKATNQVYVETRHHRGYGMWYGGGGLLLVVILVIILV
Ga0224540_1007706Ga0224540_10077062F005728LSRHRFEAYLDKVFGFSQLVGALPEGRQSPTHPWQKVFDAVFLAAAMQVPSLLQIEAECCRGALAKRIGPIRDDTIGYALQRQSPEPVFS
Ga0224540_1008181Ga0224540_10081812F021446TSTGQAQSAAEDIYNDPSPGGKYVYRGCNLAQVIFIRGDKLSEINELTLIIEVQGGQNSHTTRLTFPILAKRQEGNKLILDYQWPLGGDTYEATIIGGTLINRKTKGYLAGIREEMFTRE
Ga0224540_1008347Ga0224540_10083471F025952VEFGSTVGELTLAVFVSVPLAGAVTVTVTLLTWPLASVPNVQFTTPLLLAPPPLALTNVTPNGNVSVTVTLLALEGPKFVTEIV
Ga0224540_1008485Ga0224540_10084852F026747LQAVTRVKLEQASKAAMWTPTRRKNGEGRDDWEEPGAGARYRITVRTSRSTGVVSTACKEGNLRQWGRLGMVGESRAPNVIFGMTDHLGVGEGQRYRRDRVTPVEGRALASGVLEKEERSGDWR
Ga0224540_1008666Ga0224540_10086662F058248MTTHSQSPRDRVLWTLAAHGGKMEQSRLRRCMGVEYALLNPILDELMKEGKIRISDETISLAVR
Ga0224540_1012236Ga0224540_10122361F002448MINAKKIGLEFVTALQSLPNLLEALGGDADSIQYYSENRVVFGRRTQNNTREAILSMPLGSIMIVWQGSGPGRLGNAQVYAHNYSLYLRAPEIEDVGYEDICDWIVNDVPVGGSLKMLHTPIDPNCEPMDFQLPNSQRNTVVISADGTTFEYFEVPVRLIESFNP
Ga0224540_1013106Ga0224540_10131061F026449TISKSKMISRRLVRGDDAYNLKVTRYKYVEEADNDANKDSALI
Ga0224540_1014525Ga0224540_10145251F037997KQVYALRGTAVVGDQASEERFAEITSGRSRWQQGLVATCEDFLHEAKAEGKKSQTGLANESVGAMTEA
Ga0224540_1015347Ga0224540_10153471F100040MHIYQKYFLVVLWKILFSQATECIWENAMTKKETRPDLMKIISLGRNGIIDPDYMERWGQFKEDWTEADLAAWNKLKEKMTVSNSGELEFCPPPSSSEKVWAKKFILRAEERGLC
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