NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300022544

3300022544: Jinze_combined assembly



Overview

Basic Information
IMG/M Taxon OID3300022544 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0111485 | Gp0127790 | Ga0212120
Sample NameJinze_combined assembly
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size201359288
Sequencing Scaffolds14
Novel Protein Genes14
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea2
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon9
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon1
All Organisms → cellular organisms → Archaea → Euryarchaeota1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameBacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationBaoshan, Yunnan, China
CoordinatesLat. (o)25.4413Long. (o)98.46Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004454Metagenome / Metatranscriptome437Y
F013170Metagenome273Y
F020112Metagenome226Y
F025877Metagenome200Y
F038537Metagenome165Y
F064214Metagenome129Y
F078228Metagenome116Y
F079345Metagenome / Metatranscriptome116Y
F103293Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0212120_1001379All Organisms → cellular organisms → Archaea17828Open in IMG/M
Ga0212120_1001417All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota17399Open in IMG/M
Ga0212120_1001727All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon14832Open in IMG/M
Ga0212120_1002513All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon10960Open in IMG/M
Ga0212120_1006875All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon4694Open in IMG/M
Ga0212120_1011344All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon2948Open in IMG/M
Ga0212120_1012238All Organisms → cellular organisms → Archaea → Euryarchaeota2728Open in IMG/M
Ga0212120_1012506All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon2660Open in IMG/M
Ga0212120_1012765All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon2608Open in IMG/M
Ga0212120_1016437All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon2018Open in IMG/M
Ga0212120_1017574All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1882Open in IMG/M
Ga0212120_1022683All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1431Open in IMG/M
Ga0212120_1032698All Organisms → cellular organisms → Archaea967Open in IMG/M
Ga0212120_1042210All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon745Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0212120_1001379Ga0212120_100137916F013170MSVHLHTTITRKANEILEELAKTYGTKSRALEKALETLLRVDKVGSCDDCAIKAKVNEQTKLREALDLASISRRNLDSLLEIAIGNKTIEDFMKEQKAEAKNTIEILKSSINWKPPSNFKEFLIVLEEIRNLTNMYDIPSYSEIDNIAILRPKVFKRLPIIVAFHTATILEGIGVYFDIRVMGEDIAVKMVRPEVYPLRKKEFGEFLEQQVENELAKVTPGLFKGTLMLVGPAFMSWAEKHLEEPISDLGNLLEDARIVLGVDEFPKEPKDFVKALLSAFVKMNWFKQAKVLIEKDENVLELVFQAALPSITRISTAALSVMLATRGWKTLNYTTEHTTVNMTIQYVGAEDQSLLDQLAELSLFQVIGKQFLDVIPIPRDLFNSFALKVYESDKRKFEEIYRATGTRISNAIRMLARNDSERIKRLAKSFILKNINATQPDAEVRFVDDEHFTIIFKRIDPLVMNSQRVLIESMFRELGYEIITTTFQNLLSFKLKLLEKPVLEPLPRKKLMQTLIEGMSCNSVEEAFAIEKEQLDELFPDDYPWTIREVGERITDMYRELGIEVEIEYFEGGFTLKYKSCPYYRLVKTGQKTWLCSLRKKTIEYIISRVSHGKKGKIKIIKSLLQNEHPCEYAIFLTGFLEKEEKAEA
Ga0212120_1001417Ga0212120_100141711F079345MLSKALNLELEDLSVLQRKLLLELVHRKHPHYWSKITGHEYSWQSRKEALEEFLQNHQTELVEEFAKSGLHGNGWKTTRKGGIHV
Ga0212120_1001727Ga0212120_100172727F103293MQLETLKELPRPYEIYEFVPCHPADFKIVRYEIGKITITPKWPGAPTTKTIPAIRLHVDPATKPTFPHYWDITPTRLVHQLAAMLTAQFEPGKTIRIHRDIPGPKAHFSVMWI
Ga0212120_1002513Ga0212120_100251310F038537MRRSVYVWRELAPLVLRFCRESGICFNEVVNRAISGFLGSCDVERLRLEARLDVLLREEARLRRVCNAMLRSGSYLPGYVRRVLREPGRSLSHLPDPQRPLKALNPREERVFRRIVARREQIAREIAEIEEQLLQDVKPFRLKPDLHGRSRSRRRLCDKKGLKEVKKPNGETAQDG
Ga0212120_1006875Ga0212120_10068758F079345MLSKALNLELEGLSVLQRKLLLELLHRRYPQYWGKFTSHEYSWQSRKEALEEFLQNHQTELVEEFTKSGLHGNGWKTTRKGGIHV
Ga0212120_1011344Ga0212120_10113442F103293MELQALRELSRPYEIYEFVPCHPVDFKVMRYEVGRITIAPRWPGAPPQKTVIAVRLHVDPTTKPTFPYYWDITPSRLVHQLAAMLAADFKPGRTIRIHRDIPGPKAHFTVQWL
Ga0212120_1012238Ga0212120_10122382F078228MAKKFTMSMPDDMYAALEKERQRRKLGTIQELIRFIISDYFKEKTT
Ga0212120_1012506Ga0212120_10125061F079345MLSKALNLELEGLSVLQRKLLLELLHRRYPHYWGKFTSHEYSWQSRKEALKEFLQNHQTELVEEFAKSGLHGNGWKTAR
Ga0212120_1012765Ga0212120_10127652F020112MEKEAPKTRIKGELQMISRAFRKCVELVEEMLGRGYRLQIPSTEVERLIKIGVGADKRTVQKYMRMLTEDLGFLKTAAKNPLGVVIYRIDVEAIEQFVGEHLKDKLRQLKLSDIRLEQNSIEKEVKTEKI
Ga0212120_1016437Ga0212120_10164373F025877MPGLDETENTFRYRVQNPDKFDRFRVKEITHGVKITLGRVKGTSRWEIQNYIFDKKLFRTREQVQKWLEKHLKSEVKTLLDFNAWNEHRKRLLQVYLEISKIA
Ga0212120_1017574Ga0212120_10175743F064214MSEKGDLKVLAKSAEDLAYALRDTLDVLADHERRIKRLEEKLGFLADVESRVVEKAVAGGHVE
Ga0212120_1022683Ga0212120_10226833F079345MLSKALNLELEGLSVLQRKLLLQLLHRRYPHYWDKFTSHEYTWQSRKEALEEFLQNHQTELVKEFVRAGLHGNGWKTTRRSGARVQG
Ga0212120_1032698Ga0212120_10326982F004454LSRDFRRTVVEVREDLHREVRKLALLNDLRIYQLVNAIIEDYLRDGERVKALIKRLRLQFPPPP
Ga0212120_1042210Ga0212120_10422102F004454MRQVYRRTVVEVREDLHREIRKLALLNDLRIYVLANAIIEEFLKDEERVRALVKRLRLQHLGA
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