Sample 3300022550

3300022550: Zodletone_combined assembly

Overview

Basic Information
IMG/M Taxon OID	3300022550 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111485 \| Gp0138765 \| Ga0212127
Sample Name	Zodletone_combined assembly
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	684050652
Sequencing Scaffolds	37
Novel Protein Genes	39
Associated Families	30

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	19
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix → unclassified Caldithrix → Caldithrix sp.	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2
All Organisms → cellular organisms → Archaea	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Verstraetearchaeota → Candidatus Methanomethylicia → Candidatus Methanomethylicales → Candidatus Methanomethylicaceae → Candidatus Methanosuratincola → unclassified Candidatus Methanosuratincola → Candidatus Methanosuratincola sp.	2
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua → unclassified Candidatus Scalindua → Candidatus Scalindua sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Oklahoma, Zodletone Spring
Coordinates	Lat. (^o)	34.9956	Long. (^o)	-98.6889	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017852	Metagenome / Metatranscriptome	238	Y
F018530	Metagenome / Metatranscriptome	234	Y
F020727	Metagenome / Metatranscriptome	222	Y
F024682	Metagenome / Metatranscriptome	205	Y
F025653	Metagenome / Metatranscriptome	200	Y
F029147	Metagenome / Metatranscriptome	189	Y
F030484	Metagenome / Metatranscriptome	185	Y
F037787	Metagenome	167	Y
F038920	Metagenome / Metatranscriptome	165	Y
F043801	Metagenome / Metatranscriptome	155	Y
F046145	Metagenome	151	Y
F047154	Metagenome	150	Y
F047754	Metagenome / Metatranscriptome	149	Y
F049073	Metagenome / Metatranscriptome	147	Y
F058721	Metagenome / Metatranscriptome	134	Y
F060099	Metagenome	133	Y
F062884	Metagenome / Metatranscriptome	130	Y
F063816	Metagenome	129	Y
F066901	Metagenome	126	Y
F070129	Metagenome	123	N
F071370	Metagenome	122	Y
F074887	Metagenome	119	Y
F076229	Metagenome	118	N
F082709	Metagenome / Metatranscriptome	113	Y
F091056	Metagenome / Metatranscriptome	108	Y
F092080	Metagenome	107	Y
F098287	Metagenome	104	Y
F098292	Metagenome / Metatranscriptome	104	N
F102144	Metagenome	102	Y
F105450	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0212127_10006458	Not Available	3082	Open in IMG/M
Ga0212127_10011633	All Organisms → cellular organisms → Bacteria	2295	Open in IMG/M
Ga0212127_10013657	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix → unclassified Caldithrix → Caldithrix sp.	2117	Open in IMG/M
Ga0212127_10014947	Not Available	2029	Open in IMG/M
Ga0212127_10020028	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1759	Open in IMG/M
Ga0212127_10028798	All Organisms → cellular organisms → Archaea	1476	Open in IMG/M
Ga0212127_10029078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1469	Open in IMG/M
Ga0212127_10029601	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Verstraetearchaeota → Candidatus Methanomethylicia → Candidatus Methanomethylicales → Candidatus Methanomethylicaceae → Candidatus Methanosuratincola → unclassified Candidatus Methanosuratincola → Candidatus Methanosuratincola sp.	1457	Open in IMG/M
Ga0212127_10039300	Not Available	1274	Open in IMG/M
Ga0212127_10042283	Not Available	1232	Open in IMG/M
Ga0212127_10052596	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua → unclassified Candidatus Scalindua → Candidatus Scalindua sp.	1111	Open in IMG/M
Ga0212127_10052925	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1108	Open in IMG/M
Ga0212127_10061642	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1031	Open in IMG/M
Ga0212127_10061693	All Organisms → cellular organisms → Archaea	1031	Open in IMG/M
Ga0212127_10063497	Not Available	1017	Open in IMG/M
Ga0212127_10087756	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	875	Open in IMG/M
Ga0212127_10087937	Not Available	874	Open in IMG/M
Ga0212127_10100760	Not Available	822	Open in IMG/M
Ga0212127_10113658	Not Available	778	Open in IMG/M
Ga0212127_10123335	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Verstraetearchaeota → Candidatus Methanomethylicia → Candidatus Methanomethylicales → Candidatus Methanomethylicaceae → Candidatus Methanosuratincola → unclassified Candidatus Methanosuratincola → Candidatus Methanosuratincola sp.	749	Open in IMG/M
Ga0212127_10148704	Not Available	688	Open in IMG/M
Ga0212127_10150226	Not Available	684	Open in IMG/M
Ga0212127_10153430	Not Available	678	Open in IMG/M
Ga0212127_10154712	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	675	Open in IMG/M
Ga0212127_10154973	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	675	Open in IMG/M
Ga0212127_10174392	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	640	Open in IMG/M
Ga0212127_10179664	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon	631	Open in IMG/M
Ga0212127_10180544	Not Available	630	Open in IMG/M
Ga0212127_10180599	Not Available	630	Open in IMG/M
Ga0212127_10197482	Not Available	605	Open in IMG/M
Ga0212127_10198161	Not Available	604	Open in IMG/M
Ga0212127_10203999	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	597	Open in IMG/M
Ga0212127_10214954	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	583	Open in IMG/M
Ga0212127_10257047	Not Available	539	Open in IMG/M
Ga0212127_10268428	Not Available	529	Open in IMG/M
Ga0212127_10285428	Not Available	515	Open in IMG/M
Ga0212127_10294778	Not Available	508	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0212127_10002481	Ga0212127_100024814	F091056	MFIIVLAAAALLAIPVAASANGSAVDQFSAVKYIRNLSDLACQYRDHGLSLQLDGYNYEWLIFQDSCIRDNIEAELIILGRSREHIIDPLAWQLHVDMLGATIEQINTISDELLTYNFYPNQDRIVQKIQRKANEGSGVLGDIEDELGRGEERNYADLATYGETLWLIGNDLICLVKDLDFENWTALYSGDLCAGDCGQNSFEVQTACWECGSESCNGCPEVGCATVQGKECETKRCAPTNKCKGKGCKQNTCGHCR
Ga0212127_10006458	Ga0212127_100064583	F074887	MHYEVVWPSGDLLGIFPSYPAALARARVWWDRGYACRIRKCMASLAPSALTMAAAVHQLRRGDR
Ga0212127_10011633	Ga0212127_100116333	F105450	VSLEDRFKKFASEQEAPVGQRHGGYEKNLEYLNKVDSMVSGILETFCQAVGWGLKRNDCCDRDKGAVSCNYILEHRDFWREGFVAVDVEVTWGTYSDPLEAVTVYHGEVGGTGDHVRVYSSRIVIPFDKLTEERLAAALEQQSGNVIRRISYLQKPQ
Ga0212127_10013657	Ga0212127_100136572	F043801	MTKKLTGICPCGFSFTTPHGEDDAVAVMQYHVKLVHEKEYPNGQTRAEAMEHIKEVE
Ga0212127_10014947	Ga0212127_100149476	F030484	MVDKKEEAVDEAISKMSQIKKAAGDFKENVAGLVKDANIESTDWRFNVESHKEGVTIDIAIKLLITKKEEDLETSN
Ga0212127_10020028	Ga0212127_100200282	F037787	MKIYSDDPNLPYKTTKLKALYTKSEIDGLFAKWGVKDVYWHWDPEHNDIFVQFKIAEEIDGVLLQVSAKVEAPSIWDHRTRSKAEGVNWDNSMRVMYWFIKSHLEAAYLLQSSKTAAFLPYIASKDGAKVLKDILIPRMNQIQQLAALPQKPVEKVIDVE
Ga0212127_10028798	Ga0212127_100287981	F038920	SRSCTCRRSNTNCLELLTVLTEILTDQQLIDLYTTDGYLVAVDYTKNEIKLHTVDCMLADPISSIGVKPTKSRENNTGEFWFSKNKDEANKKAEQIAKTKGYTYIICPICNR
Ga0212127_10029078	Ga0212127_100290782	F018530	VAVLEGIPGVSDTTKHFVQAVRLYMRDFPELNRLIAGEETSDRQIAWSVLDALSDFNSTPHFTNLTLEQLFQRNMQWLMLRLTVIAVIESVGLLQTRNHINYSTGGINVGINDKTPMLMNWLQYFRGITEQRKQQIKVALNIESILGPSNVGIHSEYWAVNATYLSY
Ga0212127_10029601	Ga0212127_100296011	F037787	KSEIDGLFARWGVRDVYWHWDPDHNDVFVKFKIVEEIEGVPVDIAAKVEAPVIWNHKTRSKVESVNWNISMRVMYWFIKSHLEAAYLLQSSKTAAFLPYIASRDGEKTLKDVIIPRLNELQRLEGLEYKVLEKDKVIDVGSKEAREV
Ga0212127_10039300	Ga0212127_100393002	F025653	MKYFESKLKTMCLAELKDYRKRLDESIKQKIDQTAPNEQIAPLILYRGIVEHEMTTRMNKMKNQ
Ga0212127_10042283	Ga0212127_100422832	F098292	MSDAIRRIERWQKKYSPERTKATLELLQEEMRQRYAAVTTEMTAMELQVKEVLNQMGVHTTNYVPYLSYARQLWKLGRQQNISGESFAMASEVLLQKWAGRGQDPDVLAAIRTKVFNSPPPKP
Ga0212127_10052596	Ga0212127_100525962	F049073	MNDQIRETIRFVLEDDNEGMRTALGPGSDLDPENKQMNRELIKKQEQILVKLDNDEALSQDDLVLIRDANEIHVNDTLDLNGHYKEGLALEEWLANMIELDRETAMKILEQWLDRDSHTPGRVYRALHTLWEEATPDGAVSRPAFDDEGRCLKCGSKVSFADVTDTVVFVGEEIVKRHPGDITNRNCVRCTYPKQYPDYK
Ga0212127_10052925	Ga0212127_100529251	F070129	MQYSATTEALLQAIKQDVKHRVDEIVDEAEQAAMTLESERHVDQVLEQALALVEEALAEAAHAMAREIHRERAS
Ga0212127_10061642	Ga0212127_100616422	F024682	VNAEDELISKLKSEIGKTLPAMFAGMAENMLENNKDVIIAWLKDNKDLVKEVIES
Ga0212127_10061693	Ga0212127_100616932	F043801	MAKKLTGICPCGFSFTTPHGEDDAVAVMRYHVKLLHEKEYPNGQTRAEVMEHIKEVE
Ga0212127_10063497	Ga0212127_100634972	F070129	MQYSATTEALLQAIKQDVKHRVDEIVDEAEHAAMTLESERHVDQVLEQALALVEQALAEAAHAMAREIHRERAR
Ga0212127_10087756	Ga0212127_100877561	F047154	MPYECEEARLSAGEIAEIYRNMKARGLSYIFCQACSEEMKPEQARKSATGLILCRPCHMCNDTDATQEEIDQAIDEDFSGYLACFNQS
Ga0212127_10087937	Ga0212127_100879372	F071370	MEGLSNKAQAALVGVSSGLIAFGTAAAAVPDFIPAEVKVPIAVTAWLAGVIGFSLKEALGGKGA
Ga0212127_10100760	Ga0212127_101007602	F024682	LSAEDELISKLQIEIGKKVPAMFNRMAKNMLANNKEVIINWLKDNKELVKEVIES
Ga0212127_10113658	Ga0212127_101136582	F058721	MLFMLRENLPCADPHCKHQMRLVFQNERFIGYRCLMKPNSHNFRYDIENKKWEKLIIKTKPLLKYKEAPYEEEIDEPIAAEPI
Ga0212127_10123335	Ga0212127_101233351	F037787	LFAKWGVKDVYWRWDPDRNDVFVQFKITEEIDGVPLQVSAKVEAPVIWNHKTRSKAEAVNWNISMRVMYWFIKSHLEAAYLLQSSKTAAFLPYIASKDGEKTLKDVIIPRINELQRLDALESRVLEKKRKVIDVNGNEVEG
Ga0212127_10131213	Ga0212127_101312132	F029147	MGRIVDLCGEIAAVADEGPEGLLLPPDAWERLRETWSDDDIEDA
Ga0212127_10148704	Ga0212127_101487041	F070129	MQYSATTEALLQAIKHDVRERVDQIVDEAEHAAMTLESEQHVDQVLEQALLLVEEALAEAAHAMAREIHRERAS
Ga0212127_10150226	Ga0212127_101502262	F020727	MQKYLVLVKTIPGKGKEFWEDFSKMPDKPREGVMIESSWSLYGYWDFVIFFKADSNENSLHFVGENLRAIRGISDTSTSPMTILKEHIKM
Ga0212127_10153430	Ga0212127_101534301	F105450	VTLEDRFKSFASEQKAPPDQQHDPYKRDVESMNKVDSIVSKVLEAFCHAVGWGLKRSDYCDRDKGAVSCNYILEHRDFCREGYLTVDVEVTRGYRSDPVEAVTLYQGAIMGATEHARDFASKVVIPFSQLREEGLATALEQQSRNLIRRIIRLEKPKPPISVERE
Ga0212127_10154712	Ga0212127_101547121	F076229	MMKREESAYVAFGQYWLQARQQETIRLWMTNSICVVFAALLAVIVWRGLAYWYIAAFGFSLALFGFFMNHTLRVLMIRYSRVAGALMDSELELGDYRRFVEGGDKKGVRGAWDTVWTVHIAFVLLYAFAIGGWAALLAMTQGTIDWLVIFTFASLTFCSILFYRVFLWPRE
Ga0212127_10154973	Ga0212127_101549731	F060099	MGLSDDQRDEAMKALRGAEEALEYLIKGVKGLEEPPTLAGRFDELELYLKRARMALKFV
Ga0212127_10174392	Ga0212127_101743921	F082709	VNNIPMCADAEGNNGDQRFNGIAYNSKRNEFLASWTDSREGMHNVGIVGRIVKADGTMPAKDFILVDAPGAQMISHSAYLPQQDKYFMAFEYSRNELDKFYFKDINARLDIGARWLGANGQPEGDLIDICSSEGNQRFVRFAHNAAGDTFLLVWQDDFPGVSDSVEGHIMSAGGTIMGALYKK
Ga0212127_10179664	Ga0212127_101796642	F017852	KRFISLSYTIPVESEIMPTFLIISRHSPENCPMNNEKMKRMTLELPDKLGGLEKKHGIKRVGVWTVIPEHLLVWVYEAPSSEALQKFSMEPEMVKWMAWNTSEIKLAMSLEESIQLLK
Ga0212127_10180544	Ga0212127_101805441	F066901	MKHPCEAQVAWQICKLLSDLDVLLWQLYWDEFEALYEKEEAEKYWGETIHTIQDACQT
Ga0212127_10180599	Ga0212127_101805991	F062884	MERDGREVDALSIFLMGLGVLLLVLGPCAGLYGIAMGFVALVGCWVVAITLRVFYFGGSRDDRRSRYV
Ga0212127_10197482	Ga0212127_101974821	F043801	MAKKLSGVCPCGFSFVTPHGEDDAVAVMQYHVKLVHEKEYPNGQTRDEAMEHIKEVE
Ga0212127_10198161	Ga0212127_101981611	F092080	MQDKRITIRIPFEIWKGLRELQTMGKISSIQQAAVTGMVNLIESLQAGPGQNQREAAKKRVLNILVKEKPLGNWEDVHRERTDADACRS
Ga0212127_10203999	Ga0212127_102039991	F063816	MESVELKLREIDNGQFPVVLTKKIVEILREPEMSIEVKAGQITEDVSRLLDSLGYVITAKKPMDGWMRLQAVKQKTQ
Ga0212127_10214954	Ga0212127_102149541	F098287	FIAFNPPGRKHISLATRYSEDVGVVTDLLKKYRPEIVITHTLGGEKLDHEGTAYMVYLAFKRAIQDEVPVGRLWMTVNGWLLEREAMESGRGKPDVSIDVSDYLAVKYRALDQHRSQNGGFGRDYIVINKGKVNEDIEEFITVVDNTK
Ga0212127_10257047	Ga0212127_102570471	F102144	MVSLKEVWSPSRIRAEANNIEDHLLNTTQRLLRLERQYRQKKMEYLARIEAYEERLKWVTAEMQ
Ga0212127_10268428	Ga0212127_102684281	F047754	YRRRGDMKRIFCVLVAISCIFVFASCSLINSGSPTTNSETVPSNYPDSVVYKIELSNETYLCSSFDVSNTDAEISLRLNEVYSVSSDGKITWIGKEKNISAVKIEKIVK
Ga0212127_10285428	Ga0212127_102854282	F046145	QVCLNFYWKLFEWITARYEKTIPDWLECNHMVLKPKPFPEASTGFFITNRYLRVLSEKI
Ga0212127_10294778	Ga0212127_102947781	F066901	MKHPCEAQVAWQSCKLLSELDVLLWEFYWGEFEALYEKEEAEEYWGETQTSLHHHSH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300022550: Zodletone_combined assembly

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences