NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300022745

3300022745: Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 1-17_Aug_MG



Overview

Basic Information
IMG/M Taxon OID3300022745 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0131212 | Gp0267122 | Ga0228698
Sample NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 1-17_Aug_MG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size350912595
Sequencing Scaffolds29
Novel Protein Genes33
Associated Families28

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria4
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes3
Not Available7
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida1
All Organisms → Viruses1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Laurasiatheria → Artiodactyla → Ruminantia → Pecora1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea4
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Tectiliviricetes → Kalamavirales → Tectiviridae → Deltatectivirus1
All Organisms → cellular organisms → Eukaryota → Opisthokonta1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Vibrio phage 1.187.O._10N.286.49.F11
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Laurasiatheria → Artiodactyla → Ruminantia → Pecora → Bovidae → Bovinae → Bos → Bos grunniens1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFreshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater biome → bayou → fresh water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Georgia
CoordinatesLat. (o)33.9406Long. (o)-83.5607Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001445Metagenome692Y
F002002Metagenome / Metatranscriptome605Y
F002031Metagenome / Metatranscriptome601Y
F004727Metagenome / Metatranscriptome426Y
F018510Metagenome / Metatranscriptome234Y
F019483Metagenome / Metatranscriptome229Y
F024195Metagenome / Metatranscriptome207Y
F027822Metagenome193N
F039667Metagenome / Metatranscriptome163Y
F042304Metagenome / Metatranscriptome158Y
F051243Metagenome144Y
F060332Metagenome / Metatranscriptome133Y
F061021Metagenome132Y
F063596Metagenome / Metatranscriptome129Y
F064409Metagenome128N
F066524Metagenome / Metatranscriptome126Y
F066535Metagenome / Metatranscriptome126Y
F069988Metagenome / Metatranscriptome123Y
F072383Metagenome / Metatranscriptome121Y
F073235Metagenome / Metatranscriptome120Y
F078424Metagenome / Metatranscriptome116Y
F086741Metagenome / Metatranscriptome110N
F092248Metagenome / Metatranscriptome107Y
F095566Metagenome / Metatranscriptome105Y
F096054Metagenome / Metatranscriptome105Y
F100652Metagenome / Metatranscriptome102N
F102809Metagenome / Metatranscriptome101Y
F104576Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0228698_1000298All Organisms → cellular organisms → Bacteria42010Open in IMG/M
Ga0228698_1000399All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes35377Open in IMG/M
Ga0228698_1000772Not Available19732Open in IMG/M
Ga0228698_1003375All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage6278Open in IMG/M
Ga0228698_1005141All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida4688Open in IMG/M
Ga0228698_1005988All Organisms → Viruses4190Open in IMG/M
Ga0228698_1008539All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3249Open in IMG/M
Ga0228698_1008635All Organisms → Viruses → Predicted Viral3224Open in IMG/M
Ga0228698_1020469Not Available1760Open in IMG/M
Ga0228698_1022448All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Laurasiatheria → Artiodactyla → Ruminantia → Pecora1654Open in IMG/M
Ga0228698_1043182All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea1075Open in IMG/M
Ga0228698_1044455All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1056Open in IMG/M
Ga0228698_1046384All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1028Open in IMG/M
Ga0228698_1057499Not Available900Open in IMG/M
Ga0228698_1057509Not Available900Open in IMG/M
Ga0228698_1057841All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea897Open in IMG/M
Ga0228698_1070622Not Available794Open in IMG/M
Ga0228698_1075458All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Tectiliviricetes → Kalamavirales → Tectiviridae → Deltatectivirus762Open in IMG/M
Ga0228698_1077509All Organisms → cellular organisms → Bacteria749Open in IMG/M
Ga0228698_1079123Not Available740Open in IMG/M
Ga0228698_1087909All Organisms → cellular organisms → Bacteria693Open in IMG/M
Ga0228698_1096712All Organisms → cellular organisms → Eukaryota → Opisthokonta654Open in IMG/M
Ga0228698_1099881All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Vibrio phage 1.187.O._10N.286.49.F1642Open in IMG/M
Ga0228698_1102570All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea632Open in IMG/M
Ga0228698_1121557All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Laurasiatheria → Artiodactyla → Ruminantia → Pecora → Bovidae → Bovinae → Bos → Bos grunniens570Open in IMG/M
Ga0228698_1130229All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage547Open in IMG/M
Ga0228698_1138832All Organisms → cellular organisms → Bacteria527Open in IMG/M
Ga0228698_1139213Not Available526Open in IMG/M
Ga0228698_1141103All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea522Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0228698_1000257Ga0228698_100025741F042304MEKLINTYRAAPTDANRTKLQKYLDKHMMAICMATPEELAFLKANGFSI
Ga0228698_1000298Ga0228698_100029851F066535MGVQTFPQVLAVGKVDGPTLTAAAAASCIPTPEKLTLPNNYWYIGRTWRLTMHGRISTVITTPGTARFDLRIGAVVAWDSQAILLDTVAGHTTMPWVLEVLLTCRAVGTGTSTQLFGVGKWSCEDILGTPATSPKGSLVAMLPWNAAPALGTGFDNTALNTVDVFFTQTAATGSLTVHQYLLEELT
Ga0228698_1000399Ga0228698_100039918F078424MTVTGQVFSGVSAQPSIDSAEQQFTHVVATVTTSGSTTLHTPATGKAVRLRWIYAVGDPAAATTPLIKILLGAEEKYRVYAISKRQLVTGPVDGALIVNLSASGSVAVTALLEEV
Ga0228698_1000772Ga0228698_10007722F004727MKVTITYHDNDSFTVEEVVKQAVQNYGKAAQVDIMPESTLAYDHIYFGLQQLITHEQLSLLFDRGSNYQGEINKLRQDVLYKVTEIIDQVIIDNEAKVE
Ga0228698_1003375Ga0228698_100337514F073235MCNFKSGIVVQDLKEKGGFRLLMSPWTESHSELCDIYKVKDGARLTFARVEFSPPSMDVAHLVDGYKLRIDEDRTPEWFTDDMKEKVSDKMRAYVKAMIVNGDVSLLIGGQFIIAPGAKVECAKAMVINAICGGTVSAIRGGTVSEIWGGTVSEICGGTVSAIR
Ga0228698_1005141Ga0228698_10051413F092248LLRLLLPLSDMVYLIFRTWHEASRSPKGSPDHSKSVGATGGVYKGQGLNRRKVMTCAY
Ga0228698_1005988Ga0228698_10059881F104576LEKCVNNNRVLVYDQENGLETTEILVQSIITDEGLLHPYAVGEINLQVRYALM
Ga0228698_1008539Ga0228698_10085393F019483MATGMGTATIDFGSFPGTSEASIAVTGQTTISATSKAEAYMMADDSTAGHTAADHRYAAALIGFTCGTPSAGTGFTIYGRALDKMQGTFALRWVWAD
Ga0228698_1008635Ga0228698_10086351F073235MCNFKSGIVIQDLKEKGGFRLLMSPWTESHSELCDIYKVKDSARLTFARVEFSPPSMDVAHLVDGYKLRIDEERTPEWFTDEMKEKVSEKMRAYVKSMIVTGDVCLLIGGQFIIAPGAKVECAKAMIINAICGGTVSEICGGTVSKICDGTVSAIWSGTVSEICGGTVSEICGGTVSAIR
Ga0228698_1020469Ga0228698_10204691F073235MCKFKSGIVLRDEREKGGFKLLMSPWTESHSELCIIHKIKDGARLNFARVEFSPDTMSNAHLLEKYSLTIDEVRTPDWFDEEMKLSVAAKMETYVKGLIVTGDVELLIGGQFIVAPGASVRSAHTMVINAICGGTVSAIWGGTVSEICGGTVS
Ga0228698_1022448Ga0228698_10224484F051243MVVLQGNGTPLQYSCPENPMDGGAWWAAVHGVAKSRTRLSDFTFPFHFHALEKEMATHSSVLAWRIPGTGEPGGLPSRV
Ga0228698_1043182Ga0228698_10431821F060332SAQIEPWSRMDTFSKVSQFIPDQNKIRLSNGREYTYKSLVLSTGFNHSSEHIEGLSAMEHDPQSNVFVHAIDNKERVDRNYYHGWNHTNGDMICYSPKFPYKGEGSDFYPLYYHHFLRQDILQGRAAKNARIQYWTPNKEIFKFPYANEVALEECKKRGIEIFFGWEMLKVHTNSIGQKIATFRNVDSGETIEKDFFSAVINPPSKPHSELLDSGIATSEGVVDVNPYTL
Ga0228698_1044455Ga0228698_10444551F063596MSSTSAAFGFRPSYHNSGNIRPKAYTIATGYAANIFNGDPVKLVT
Ga0228698_1046384Ga0228698_10463844F018510ANKGDGLPRHDHVYAHATVCHSGSIVVRIEGRDVVFTKTAQPAVLSAAKWHEIEALEDGTVFENIFRTE
Ga0228698_1057499Ga0228698_10574992F064409VKLFTLPRVSPRYALRAALYRRVARGQGVTGLDFSEAALRQLYDFESRGIGSVDKARNGYAYGKWCVDLSVSMWVEDIQAGNACKAEFLQTAIQRIHNADKLKNMIAGEFFPWRQEIADYKVAP
Ga0228698_1057509Ga0228698_10575091F019483PGANDASIAVTGQTGISATSKAEAFIMADDTSTDGHTANDHRYFDMLAGLTCGTPTDGTGFTIYATSQHKLQGKFALRWVWSD
Ga0228698_1057841Ga0228698_10578411F100652MVYKIRNKGFNNTAAALNPRVHPAKKTKIHADLTRYITMQVQITRFTGMRILHNYRNISRASKQFLMGDRILEQLMILTVKEHYFRPMYYRSPIENSFYLGRSLADLTDRHYALFANNQHPLQLYVYEEYNKFLRAAHCKQNQENLAAIDARMGEVMEDRSKLLNSKEGELLSFDDISDVYMQVMGEHRSKTNMSLTTRSKTGEISDYLEVRRPFGAAQ
Ga0228698_1060588Ga0228698_10605882F096054MDLNVYEDDDDETLHRKLIAAKIARKRAEEDHKLLSNRIALLKQEEQKVPQELL
Ga0228698_1070622Ga0228698_10706222F027822RKLRNRIPGKLVVKDLQTIYFDACGGDRNAITFVACFHHYCHAIDDLVDGDVPFSPSALLDIVMQANALYSLPFYIEHWFRLQPVIALIANTYADSVAWEKSAEDWKRNIADVIRQCGNDMIMAVAWIVGGYQLMRKISLELREVAYHSQHS
Ga0228698_1075458Ga0228698_10754582F024195ETMGDRAFNVLGAIVTVALVTTIVSRPTSAAVIKAMGDAFAGSISAALGKGAL
Ga0228698_1077509Ga0228698_10775091F086741PNTMSLPHIMLVKWHRAGGGAEYGVECRDFNPDARWDVVGSVVLMPDVHIYRFSPTAIWRKKRVLPPHLYGLEQPERVAEIRGLYRGYRFGAWGEAVHQCAIALMRERHYPERLAYRWDVLWRGADRKTV
Ga0228698_1079123Ga0228698_10791232F072383MQVNISYTDTESLTMEEVVKQAVHNYGKLVKVEVKPESNLAYDHIYFGLQQLVSHEQFSLLFERDANY
Ga0228698_1087909Ga0228698_10879092F019483MATGMGTATIDFGSFPGTSEASIAVTGQTTISATSKAEAYMMADDSTAGHTAVDHRYAAALIGFTCGTPTAGTGFTIYGRALDKMQGTFALRWVWAD
Ga0228698_1096712Ga0228698_10967121F002002QEMWVWSLGWADTLEKEMATHFHILAWKIPWTEELGGPQAMGLQKSRT
Ga0228698_1099881Ga0228698_10998811F069988VAEHDDYCDAFSQAIIYLKNDGWFVLPTAKDRDEPARPPKQKINPYAA
Ga0228698_1102570Ga0228698_11025701F095566MQSVVTRPVYRSDFNWTNYTSRAQLRCLLGLLFIRELPIKNFYVRCWLAYGWIIYFVARGLGRGLRHSRPIVMYNHALHAKSLMNYPDLFYWNITKVLPRNPPVPDAHREWKTRQTPVFHQYHRTTYRYRHRKPRYVPWDGS
Ga0228698_1105878Ga0228698_11058783F066524VNYTQLVQEVSSYLENTFATADMNTFIEQCEARVYNTV
Ga0228698_1121197Ga0228698_11211972F102809MIEHWRYRLGETNKTHGAPHRDRRFPVDRKKNYVRYSNFHQIRRNKRLNMIWTNWWCRDQNFRKYFEMRKRHGIRPALSGFYHEQIYADVEKKNWELSQRRASRTAI
Ga0228698_1121557Ga0228698_11215571F001445EKEMATHSSVLAWRIPGTGEPGGLPSMGSHRVGHD
Ga0228698_1130229Ga0228698_11302291F061021RFKSSKGNIMATYEQISYNSPDGSIWGKSASEKVAFYGAVPVIQRAYSSAVHATSGASVSASFGATQLAILQEIQNTLIGLGIWATA
Ga0228698_1138832Ga0228698_11388321F002031VSPKTPMLNRSKVKQFTMTTAEKRAHKFTRVGSEFFVRCEVQLKNFIRDQVHRHPSVGKT
Ga0228698_1139213Ga0228698_11392131F073235MCNFKSGIVIQDLKEKGGFRLLMSPWTESHSELCEIYKVKDGARHTFARVEFSPPSMDVAHLVDGYKLRIDEERTPEWFTEEMKEKVADKMRAYVKSMIVTGDVSLLIGGQFIIAPGAKVECAKAMIINAICGGTVAEICGG
Ga0228698_1141103Ga0228698_11411032F039667MAFYGVNLEVKVRELNLHFKLALQQKGGAVGLRSLARIFTRMDANGNKKLDASEFEQALAAFGYIVIC
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