NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300023020

3300023020: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-301



Overview

Basic Information
IMG/M Taxon OID3300023020 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0132900 | Gp0272152 | Ga0233349
Sample NameLeaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-301
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size67965604
Sequencing Scaffolds18
Novel Protein Genes18
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available18

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil And Plant Litter Microbial Communities From Temperate Forests In California, United States
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biome → litter layer → plant litter
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: California
CoordinatesLat. (o)40.2526Long. (o)-123.026Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015054Metagenome257Y
F091248Metagenome107N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0233349_1000970Not Available1892Open in IMG/M
Ga0233349_1001102Not Available1803Open in IMG/M
Ga0233349_1001369Not Available1664Open in IMG/M
Ga0233349_1002186Not Available1401Open in IMG/M
Ga0233349_1002689Not Available1298Open in IMG/M
Ga0233349_1002862Not Available1263Open in IMG/M
Ga0233349_1005283Not Available977Open in IMG/M
Ga0233349_1006138Not Available916Open in IMG/M
Ga0233349_1007530Not Available840Open in IMG/M
Ga0233349_1009420Not Available759Open in IMG/M
Ga0233349_1011165Not Available705Open in IMG/M
Ga0233349_1012596Not Available667Open in IMG/M
Ga0233349_1012735Not Available664Open in IMG/M
Ga0233349_1013249Not Available652Open in IMG/M
Ga0233349_1017754Not Available569Open in IMG/M
Ga0233349_1019292Not Available547Open in IMG/M
Ga0233349_1022429Not Available510Open in IMG/M
Ga0233349_1023169Not Available503Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0233349_1000970Ga0233349_10009702F015054MIAMKVEDHLDRATNFISWKFRVLILDENDLLKLVNQKVQEPDAEEDESHWRKSDARARKIFVDSVRDHFVP
Ga0233349_1001102Ga0233349_10011022F015054MIGMKVEDHLDGATNFISWKSRVLILEENDLLKLVNEKVSEPDAEDDKSHWRKSDCRARRILVDSVSDHLVRQISQKKTTRKILKP
Ga0233349_1001369Ga0233349_10013693F015054MIGMKVEDHLDGATNFISWKSRVLILEENDLLKLVNEKVPEPDPEEDKSHWSKSDCRARRILVDSVSDQLVPQISQKKTTRNILKP
Ga0233349_1002186Ga0233349_10021862F015054MIGMKVEKHHDGATNFFSSKFRVLIFEENDLLKLVNEKVPEPVAEEDKSHCWRSDARARRILVDLVRDHLVPQISQNKTTRKMFKTLKE
Ga0233349_1002689Ga0233349_10026891F015054MIGMKVDDHHDGATNFISWKSRVLILEENDLLKVVNENVPELVAEEDKSRRRKSDAKARRILVDSVRDHFVSHMSQKKTTRKMFKTLTE
Ga0233349_1002862Ga0233349_10028621F015054MIGMKVEDNLDGATNFIFWKSIVLILEENDLLKLVNEKVPEPNVEEDKSHWRKSDARARRILVDLVRDHLVPQISQKKTT
Ga0233349_1005283Ga0233349_10052831F091248MSRRQKKKAPVVEEQTAIEADLPTEYIYEDTQCVTGVDPEYKWGDIHRMISRREVPDMGLEEEHIYANIEKSAIMKVATRPEMFPCAELMRWILPHTNHGSMLICNVEGQGYASFSPGYVALAYHLPEPQVFLSNEWLDNLRMDLIETMRKMLLPGKLYRHRATEDYDTATLRPPYRFIALMLNRIFGRANGRLFKFEWIPLMFYVATEGTIFNWSGLVSSSLSSCIAAAKGGVQQKKSEFYMSSILIDCIICHQPFLGLK
Ga0233349_1006138Ga0233349_10061382F015054VLILEENDLLNLVSDKVPEPNVEEDKSHWRKSDARARRILVDSVRDHLVSQISQKKTTRKMFKTVKE
Ga0233349_1007530Ga0233349_10075302F015054MIGMKVEDHLDAATNFISWKSRVLILGENDLLKLVNENVPEQDVEEDKSHWRKSDARARRILVNSVRDHLVPQILQTKTTMKMFKTLKE
Ga0233349_1009420Ga0233349_10094201F015054MIGMKVEDHLDGATNFISCKSRVLIVEENDLLKLVNEKVPEPDAEEDKSHWRKSDCRARRILVDSVSDHLVPQISQKKTTTKILKP
Ga0233349_1011165Ga0233349_10111651F015054FISWKSTVLILKENDLLKLVNEKVPEPDAEEDKSHWRKSDCRARRILVDSVNDHLVPQISQKKTARMILKP
Ga0233349_1012596Ga0233349_10125961F015054MIGMKVEDHLDGATNFISWKSRVLILDENDLLKLVNEKFPEAGADEDKSHWKKSYARARRILVDSVRDHLVPQISRKKTTRKMFK
Ga0233349_1012735Ga0233349_10127351F091248AEAETKTEYIYEDTQCVSGVEPEYKWGEIYRLISCREVPDTGLEEESIYANIEKSSIMKVATRPELFPCSEVIGWILPHVNTTTMIIGNVEGQGYAAFIPGYVALAYHLPEAQVFLSDDWLDSIRMDLVETLKKMLLQGKLYRYRQTGEYDTASLRAPYKFIAPMLNRIFGRAHGRLFKLEWIPIIFHVATQGTVFNWASLVSSSLSSCLAAALGGEAQKR
Ga0233349_1013249Ga0233349_10132491F015054FIFWKSIVLILEENDLIKLVNEKVPEPNVEEDKFHWRKSDATARRILVDSVRDHLVPQISQKKTTRKMFKTLKE
Ga0233349_1017754Ga0233349_10177541F091248YANIERSAIMKVATRPEMFPCSEVMKWILPHTNHGSMLICNVEGQGYAAFSPGYVALAYHLPEPQVFLTNEWLDNLRMDLIETMRRMLLPGKLYRHRATEDYDTASLRAPYRFIALMLNRIFGRANGRLFKFEWVPLIFYVATEGTIFNWSSLVSSSLSSCIAAAKGGVEQKKSEFYMSSILIDCILCH
Ga0233349_1019292Ga0233349_10192921F015054MTIEDNLDGATNFISWKYRVLILGENDLLKFVNEKVREQDVEEDKSHWRKSDARARRILVNSVRDHLVRQILQTKTTMKMFKTLKE
Ga0233349_1022429Ga0233349_10224291F091248EAKIEYIYEDTQCVTGVEPEYKWGDIYRMISRREVPDMGLEEAPIYANIEKSAIMKVATRPELFPCSELMRWVLPHTNHNSMLICNVDGQGYAAFSPGYVALAYHLPEPQLFLTDRWLDDLRMDFVETLKRMLLPGKIFRHRVTEDYDIATLRPNYRFIALMLNRIFGR
Ga0233349_1023169Ga0233349_10231691F091248TQCVTGVDPEYKWGDIHRMISRREVPDTGLEEEHIYTNIEKSAIMKVATRPEMFPCAELMRWILPHTNHGSMLICNVGGQGYASFSPGYVSLAYHLPEPQVFLTNEWLDSLRMNLIDTMRKMLLPGKLFRHRVTEDYDTATLRPPYRFIALMLNRIFRRADAKLFKF
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