NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300023024

3300023024: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-209



Overview

Basic Information
IMG/M Taxon OID3300023024 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0132900 | Gp0272135 | Ga0233332
Sample NameLeaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-209
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size80449751
Sequencing Scaffolds19
Novel Protein Genes19
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available19

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil And Plant Litter Microbial Communities From Temperate Forests In California, United States
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biome → litter layer → plant litter
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: California
CoordinatesLat. (o)40.2526Long. (o)-123.026Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015054Metagenome257Y
F091248Metagenome107N
F106076Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0233332_1001770Not Available1680Open in IMG/M
Ga0233332_1002595Not Available1422Open in IMG/M
Ga0233332_1003085Not Available1326Open in IMG/M
Ga0233332_1003720Not Available1227Open in IMG/M
Ga0233332_1004095Not Available1172Open in IMG/M
Ga0233332_1004710Not Available1098Open in IMG/M
Ga0233332_1006470Not Available945Open in IMG/M
Ga0233332_1007158Not Available901Open in IMG/M
Ga0233332_1009191Not Available802Open in IMG/M
Ga0233332_1010278Not Available758Open in IMG/M
Ga0233332_1010690Not Available745Open in IMG/M
Ga0233332_1010914Not Available738Open in IMG/M
Ga0233332_1011056Not Available734Open in IMG/M
Ga0233332_1012122Not Available702Open in IMG/M
Ga0233332_1012228Not Available699Open in IMG/M
Ga0233332_1014134Not Available652Open in IMG/M
Ga0233332_1015238Not Available630Open in IMG/M
Ga0233332_1017297Not Available593Open in IMG/M
Ga0233332_1022513Not Available525Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0233332_1001770Ga0233332_10017701F015054MIGMKVEDNLDGATNFIFWMSIVLILEENDLLNLVNEKVPEPNVEEDKFRWRKSDARARRILVDSVRDHLVPQMSQRRRLGRCSKP
Ga0233332_1002595Ga0233332_10025952F015054MIGMKVEDHLDGATNFISWKSRVLILKENDLLKLVNEKVPEPDAEEDKSHWRKSDCRARRILVDSVNDHLVPQISQKKTTRMILKP
Ga0233332_1003085Ga0233332_10030851F015054MIGMKVEDHLDEATNFISXKSRVVIFEENDLLKLVNEKVPKPDAEEDKSHWKKSDCRARRILVDSVSDHMVPQISQKKTTRKILKP
Ga0233332_1003720Ga0233332_10037201F015054MIGTKVEHHLDGATNFMSWKSRVLILEENDLLKLVNEKVQKLDSEEDNYHWRKSDGRARRILVDSVRDRLVPQISQKKTTRKMFRTLKE
Ga0233332_1004095Ga0233332_10040952F015054MIGMKVEDHLDGATKFISWKSRVLLILEENDLLKLVNEKVPEPEAEEDKSHRRSDARARRIMVDSVRDHLVPQISQKKTSRKMFKILKE
Ga0233332_1004710Ga0233332_10047101F015054MIGMKVEDHLDGATNFISWKFRVLILGENDPLKLVNEKVQEQNVEEDKSHWRKSDARARRILVNSVRDHLVTQILQTKTTMKMFKTLKE
Ga0233332_1006470Ga0233332_10064701F106076WWAYVTVTPDDNNITVFNKGNSKGLTASIPIGGHXAPNSTVGDNALXKNAQNIPKKNKASDIINKATPMFNPLXTANVXLPKYVPSLITSRHQNDIDKIRDIRDNVNIVPAPEKLXNVDTALVVSDNSERQVNKGQTEGETRXKGXAX
Ga0233332_1007158Ga0233332_10071582F015054MIGMEVEDHLDGATNFISCKSRVLIVEENDLVKLVNEKVPEPDAEEDKFHWRKSDCRARRILVDSVSDHLVAQISQKKTTRKILKP
Ga0233332_1009191Ga0233332_10091912F015054MKAEDHLDGATNFISWKSRVLILEENDLLKLVNEKVPEPDAEDDKSHWRKSDARARRILVDSVRDHLVSQISQKKTSRKMFKTLKEL
Ga0233332_1010278Ga0233332_10102781F015054MIGMKVEDNLDGATNFIFWKSIVLILEENDLLKLANEKVPEPNVEEDKSHWRKSDARARRILVDSVKDHLVPQMSQKKTTRKMFKTIKE
Ga0233332_1010690Ga0233332_10106901F015054LEENDLLKLFNEKVPEADAKEDKSHWRKSDARARRILVDSVRDQLVPQISQKKMTRKMFKTLKK
Ga0233332_1010914Ga0233332_10109141F091248CLISRCFTLQEDFKMSRRQKKKAPVVEEQTAIEADLPTEYIYEDTQCVTGLDPEYKWGDIHRMISRREVPDMGLEEEHIYANIEKSAIMKVATRPEMFPCAELMRWILPHTNHGSMLICNVEGQGYASFSPGYVALAYHLPEPQVFLSNEWLDNLRMDLIETMRKMLLPGKLYRHRATEDYDTATLRPPYRFIALMLNRIFGRANGRLFKFEWIPLMFYVATEGTIFNWSSLVSSSLSSCIAAAK
Ga0233332_1011056Ga0233332_10110561F015054MIGMKVEDHLDGATNFISWKSRVLILDENDLSKLVNEKFLEAGVDEDKSHWKKSYARARRILVDSVRDHLVPQISRKKMTRKIFKTLK
Ga0233332_1012122Ga0233332_10121221F015054MIGMKVEKHHDGAINFISSKSRVLILEENDLLKFVNEKVPEPVAKEDKSHWRRSDARARRMLVDLVRDHLVPQISQNKTTRKMFKTLKE
Ga0233332_1012228Ga0233332_10122281F091248MSKRQKKKAPVVEEQTAIEADIPTEYIYEDTQCVIGVDPEYKWGDIHRMISRREVPDTGLEEEHIYANIEKSAIMKVATRPEMFPCAELMRWILPHTNHGSMLICNVGGQGYASFSPGYVSLAYHLPEPQVFLSNEWLDSLRMDLIDTMRKMLLPGKLFRHRVTEDYDTATLRPPYRFIALMLNRIFGRANGKLFKFEWIPLMFYVATEGTIFNWSGL
Ga0233332_1014134Ga0233332_10141341F091248MSKRQKKKAPVVEEQTAIEADTPTEYIYEDTQCVTGVDPEYKWGDIHRMISRREVPDTGLEEEHIYTNIEKSAIMKVATRPEMFPCAELMRWILPHTNHGSMLICNVGGQGYASFSPGYVSLAYHLPEPQVFLSNEWLDSLRMDLIDTMMKMLLPGKLFRHRVTEDYDTATLRPPYRFIALMLNRIFGRAN
Ga0233332_1015238Ga0233332_10152381F015054MIGMKVEDHLDGATNFISWKYRVLILGENDLLKFVNEKVREQDVEEDKSHWRKRDARARRILVNSVRDHLVPQILQTKTTMKMFKTLKE
Ga0233332_1017297Ga0233332_10172971F015054MIGMKVEDHLDGATNFISWKSRVLILEENDLLKLVNEKVPEPDAEEDKSHWRKSDCRARRILVDSVSDHLVPQISQKKTTRMILKP
Ga0233332_1022513Ga0233332_10225131F015054LEKIDFLKLVNKKVQKPNAEKVKFHWRKSDARARRILVDSIRDDLVPQISQKKTTREMFKTLKE
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