NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300023025

3300023025: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung G1



Overview

Basic Information
IMG/M Taxon OID3300023025 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0116274 | Gp0272185 | Ga0233382
Sample NameFecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung G1
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size56493997
Sequencing Scaffolds6
Novel Protein Genes6
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CAG:74_58_1201
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: California
CoordinatesLat. (o)38.04Long. (o)-122.5Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059515Metagenome133Y
F061388Metagenome132N
F072921Metagenome / Metatranscriptome120Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0233382_1005790Not Available1058Open in IMG/M
Ga0233382_1011194Not Available755Open in IMG/M
Ga0233382_1013332All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CAG:74_58_120692Open in IMG/M
Ga0233382_1013693Not Available683Open in IMG/M
Ga0233382_1018299All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium597Open in IMG/M
Ga0233382_1024826Not Available519Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0233382_1005790Ga0233382_10057901F072921QDSRGEHRLRIRRIRQIELQMKSRLILTTDRKSASEGEYIEIRWVCDACPDSLYLAIDSGCTQYSIAVSDSGVTRIPIPRSNGKMTVKLIGVISGKKVTESIDVRVKATKKAGTKAPLSSRMKMFGEKMQAKWYVFRANIKYWWLSQKKWQKALWIALLALWLGLLFSSIGRKPEVKVSSDKIQTAYIFS
Ga0233382_1011194Ga0233382_10111942F072921MKKQMTLSTDRKSASEGEYLDIRWECNACPDSLYLSVDSGYQQYSIAVADSGSTRLAMGRSKGKTTISLIGVISGKKVTESVKIRIRNRKESIKAKAPLSTRMKTFGEKMQAKWYVFRAQMKYWWISQKKWQKALWIALLALWLGLLFSSIGRKPEVKVSSD
Ga0233382_1013332Ga0233382_10133322F061388FYSPRDDSVHLHIPSVARGDAISTPYSVLFHEYGHMTDYLIARTHNQGNYSAYSDLFQGIGSDGKAIIRSGSSGGLLGRTAKDELEGHLARMRRQNPNLNRQQAARALVSEANSKYSYRDRSDISDMFEGAGLGIAHPLGAGHGLDYWSSRGNSKEIFAEIISAEAAHPGSLKAIKEYFPRTYQVYQDMMKARKKR
Ga0233382_1013693Ga0233382_10136931F072921MKKQMTLSTDRKSASEGEYIEIRWACDACPDSLYLAIDSERTQYSIAVSDSGTTRIPVPKSNGKMTVKLIGVISGKKVIESVDIRIKGAKRAKSNAPLSSRMKMFGEKMKEKWYVFRANMKYWWLSQKKWQKALWIALLALWLGLLFSSIGRKSEVKVSSEQVQTAYLMR
Ga0233382_1018299Ga0233382_10182991F059515LSEDMALWQKIANTDVVNDIYKMYDYVNFLCAWNTYFVNSYTDENGVTQPGYFLYASDAEDLIYKDGAQFNYGYKEGYFDSIVAEIEAVDKTAFADLVANVRKAEALANKALGELENENYTSEYKYVEKFGKEDWIFTLNKGEELTAEMQQIYMEFSNWLGSWEM
Ga0233382_1024826Ga0233382_10248261F072921MKEQMTLSTDRKSASEGEYIEIRWACDACPDSLYLAIDSERTQYSIAVSDSGTTRIPVPKSNGKMTVKLIGIISGKKVIESVDVRVKGAKGAKSNAPLSSRMKMFGEKMKAKWYVFRANMKYWWLSQKKWQKALWIALLALWLGLLFSSIGR
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