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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300023033 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0116274 | Gp0272176 | Ga0233373 |
| Sample Name | Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E0 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 65878509 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 4 |
| Associated Families | 3 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 1 |
| Not Available | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: California | |||||||
| Coordinates | Lat. (o) | 38.04 | Long. (o) | -122.5 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F041521 | Metagenome | 159 | Y |
| F048702 | Metagenome / Metatranscriptome | 147 | Y |
| F072921 | Metagenome / Metatranscriptome | 120 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0233373_1000450 | All Organisms → cellular organisms → Bacteria | 6108 | Open in IMG/M |
| Ga0233373_1007720 | Not Available | 971 | Open in IMG/M |
| Ga0233373_1017465 | Not Available | 640 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0233373_1000450 | Ga0233373_10004506 | F041521 | IYMGGFLSFSNTGAKTTLENCLFAGKFERGANLTDEARLGAFGTLRSVNAIKNCYYLAHDGLAAVHSDSDLKPGSDNVEITAVTEDDLRNNTIATQLGTLWEQGENYPVIRR |
| Ga0233373_1002205 | Ga0233373_10022051 | F048702 | MAKKKKELDRRVFKKEGEDLQQWLIFTRRGSKAKAKKGKGSYDR |
| Ga0233373_1007720 | Ga0233373_10077201 | F072921 | QMTLSTDRKSASEGEYLYIRWECNACPDSLFLSIDSGCTQYSIAVSDSGVTRIPIPRSNGKMTVKLIGVISGKKVTESIDVRVKATKKAGTKAPLSSRMKMFGEKMQAKWYVFRANIKYWWLSQKKWQKALWIALLALWLGLLFSSIGRKPEVKVSSDKIQTAYIFS |
| Ga0233373_1017465 | Ga0233373_10174652 | F041521 | GKIQENTSEVTIRNCAAYGTIKTNYEKNSYNNTATIYMGGFLSFSNTGAKTTLENCLFAGKFERGANLTDEAFLGAFGTLRSVNAIKNCYYLAHDGLEAVHSDSNLKPGSDNVEITAVTEDDLRNNTVATQLGTLWEQGENYPVIKK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |