NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300023035

3300023035: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-273



Overview

Basic Information
IMG/M Taxon OID3300023035 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0132900 | Gp0272145 | Ga0233342
Sample NameLeaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-273
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size93072583
Sequencing Scaffolds9
Novel Protein Genes9
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available9

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil And Plant Litter Microbial Communities From Temperate Forests In California, United States
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biome → litter layer → plant litter
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: California
CoordinatesLat. (o)40.2198Long. (o)-122.9842Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015054Metagenome257Y
F091248Metagenome107N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0233342_1004686Not Available1082Open in IMG/M
Ga0233342_1005127Not Available1031Open in IMG/M
Ga0233342_1006691Not Available900Open in IMG/M
Ga0233342_1006918Not Available886Open in IMG/M
Ga0233342_1007059Not Available876Open in IMG/M
Ga0233342_1007169Not Available868Open in IMG/M
Ga0233342_1013314Not Available646Open in IMG/M
Ga0233342_1014100Not Available630Open in IMG/M
Ga0233342_1019426Not Available547Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0233342_1004686Ga0233342_10046861F015054MIGMKVEDNLDGATNFIFWKSIVLILEENDLLKLVNEKVPEPNVEEDKSHWRKSDARARRILVDLVRDHLVPQISQKNTT
Ga0233342_1005127Ga0233342_10051271F091248MSKRQKKKAPAVEEVPAPDTEARIEYIYEDTQCVTGVEPEYKWGDIYRLISRREVPDMGLEEAPIYANIEKSAIMKVATRPELFPCSELMRWVLPHTNHNSMLICNVDGQGYAAFSPGYVALAYHLPEPQLFLTDRWLDDLRMDLVETLKRMLLPGKIFRHRVTEDYDTATLRPTYRFIALMLNRIFGRENGRLFKFEWV
Ga0233342_1006691Ga0233342_10066911F015054MKVEDHLDGATNFISWKSRVLILEENDLLKLVNEKVPEPDAEEDKSHWRKSDCRARRILVDSVSDHLVPQISQKKTTRKILNP
Ga0233342_1006918Ga0233342_10069181F091248MVEEQSAIEIVTQTEYIYEDTQCISGMEPEYKWGDIYRLISRREVPDMGLEEEPIYANIEKSAIMKVATRPELFPCSEVIRWILPHTNTATMLIGNVEGQGYAAFSPGYVALAYHLPEPQIFLSDDWLDNIRMDLVETLKKMLLQGKLYRYRTSGEYDTASLRAPYRFIALMLNRIFGRANGRLFKFEWIPIMFHVATQGTIFNWASLVSSSLSSCLAAAQGGEAKKKSKFYMSS
Ga0233342_1007059Ga0233342_10070591F091248MSKRQRKKAPAVEEVPAAEVETKIEYIYEDTQCVTGVEPEYKWGDIYRMISRREVPDMGLEEAPIYANIEKSAIMKVATRPELFPCSELMRWVLPHTNHNSMLICNVDGQGYAAFSPGYVALAYHLPEPQLFLTDRWLDDLRMDFVETLKRMLLPGKIFRHRVTEDYDTATLRPTYRFIALMLNRIFGRANGRLFKLE
Ga0233342_1007169Ga0233342_10071691F015054MIGMKVEDHLDGATNFISWKSRVLILDENDLSKLVNEKFLEAGVDEDKFHWKKSYARARRILVDSVRDHLVPQISRKKTTRKMFKTLK
Ga0233342_1013314Ga0233342_10133141F015054LEENDLLKLVNENVPEPDAEEDKSHWRKSDGRARRMLVDSVRDHLVPQISQKKTTRKMFKTLKE
Ga0233342_1014100Ga0233342_10141001F091248RMISRREVLDMGLEEEHIYANIEKSAIMKVATRPEMFPCAELMRWILPHTNHGSMLICNVEGQGYASFSPGYVALAYHLPEPQVFLSNEWLDNLRMDLIETMRKMLLPGKLYRHRATEDYDTATLRPPYRFIALMLNRIFGRANGRLFKFEWIPLMFYVATEGTIFNWSGLVSSSLSSCIAAAKGGVQQKKSEFYMSSILINCIICHQP
Ga0233342_1019426Ga0233342_10194261F091248NIEKSAIMKVATRPELFPCSELMRWVLPHTNHNSMLTCNTEGQGYAAFSPGYVALAYHLPEPQLFLTNEWLDDLRMDLVETLKRMLLPGKIFRHRATEEYDTASLRPTYRFIALMLNRIFGRENGRLFKLEWVPLMFFIATEGTIFNWASIVSSSLSSCVAAALEGKERRRSEFYMSSILID
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