NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300023045

3300023045: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-281



Overview

Basic Information
IMG/M Taxon OID3300023045 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0132900 | Gp0272147 | Ga0233344
Sample NameLeaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-281
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size117803868
Sequencing Scaffolds13
Novel Protein Genes13
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Tricholomatineae → Lyophyllaceae → Hypsizygus → Hypsizygus marmoreus1
Not Available12

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil And Plant Litter Microbial Communities From Temperate Forests In California, United States
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biome → litter layer → plant litter
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: California
CoordinatesLat. (o)40.2198Long. (o)-122.9842Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015054Metagenome257Y
F050386Metagenome / Metatranscriptome145Y
F091248Metagenome107N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0233344_1000962All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Tricholomatineae → Lyophyllaceae → Hypsizygus → Hypsizygus marmoreus3063Open in IMG/M
Ga0233344_1001556Not Available2384Open in IMG/M
Ga0233344_1006306Not Available1226Open in IMG/M
Ga0233344_1006361Not Available1221Open in IMG/M
Ga0233344_1008616Not Available1048Open in IMG/M
Ga0233344_1016206Not Available761Open in IMG/M
Ga0233344_1017411Not Available733Open in IMG/M
Ga0233344_1018516Not Available709Open in IMG/M
Ga0233344_1020047Not Available680Open in IMG/M
Ga0233344_1023323Not Available629Open in IMG/M
Ga0233344_1028639Not Available565Open in IMG/M
Ga0233344_1030258Not Available550Open in IMG/M
Ga0233344_1032235Not Available533Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0233344_1000962Ga0233344_10009622F050386MTEGMKKIEAFRLWGPRKSYQWKRNSEVHKLMVDIQTAHDKLGSQDGNSREHEIKVPNDY
Ga0233344_1001556Ga0233344_10015561F015054GGKMIGMKVEDHLDGATNFISWKSRVLILGENDLLKLVNEKVPEQDVEEDKSHWRKSDARARRILVNSVRDHLVPQILQTKTTMKMFKTLKE
Ga0233344_1006306Ga0233344_10063061F015054ILEENDLLKLVNEKVPEPEAEEDKSHRRSDARARRIMVDSVRDHLVPQISQKKTSRKMFKILKE
Ga0233344_1006361Ga0233344_10063612F015054MIGMKVEDHLDGATNFISWKSRVLILDENDLSKLVNEKFLEAGVDEDKFHWKKSYARARRILVDSVRDHLVPQISRKKTTRKMFKTL
Ga0233344_1008616Ga0233344_10086161F015054MIGMKVEDHLDAATNFISCKSKVLILGENDLLKLVNEKVPEQDVEEDKSHWRKSDARARRILVNSVRDHLVPQILQTKT
Ga0233344_1016206Ga0233344_10162061F091248EEQPEIEVVTKTEYIYEDTQCISGVEPEYKWGDIYRLISRREVPDMGLEEEPIYANIERSAIMKVATRPELFPCSEVIRWILPHTNTATMLIGNVEGQDYAAFSPGYVALAYHLLEPQIFLSDAWLDNIRMDLIETLKRMLLPGKLYRHRATGEYDTASLRAPYRFIALMLNRIFGRAHGRLFKFEWIPIMFHVATQGTVFNWASLVSSSLSSCVAAALGGESKKKSEFYMSSILVDCILCNQPFPGLKCV
Ga0233344_1017411Ga0233344_10174111F015054MIGMKVEDNRDGATNFIFLKSILLILEENDLLKLVNEKVPEPNVEEDKSHWRKSDARARRILVDLVRDHLVPQISQKKTTRKMFKTIK
Ga0233344_1018516Ga0233344_10185161F015054ISWKSRVLILKENDLLKLVNEKVPEPDAEEDKSHWRKSDCRARRILVDSVNDHLVPQISQKKTTRMILKP
Ga0233344_1020047Ga0233344_10200471F015054MKVEDHHDGATNFISWKSRVFILEENDLLKVVNEKVLESDAEEDKSHWRKSDARARRILVDSVRDHLVPQISQKKTTRKMLKTLMEXXLLMAKPDLYGR
Ga0233344_1023323Ga0233344_10233232F015054LDGATNFIFWKSIVLILEKNGFLKLVNEKVPEPNVEEDKSRWRKSDARARRILVDSVRDHLVPQISQKKTTRKMFKALKE
Ga0233344_1028639Ga0233344_10286391F091248RWVLPHTNHGSMLICNVEGQGYAAFSPGYVALAYHLPEPQVFLTNEWLDNLRMDLIETMRRMLLPGKLYRHRATEDYDTASLRAPYRFIALMLNRIFGRANGRLFKFEWVPLIFYVATEGTIFNWSSLVSSSLSSCIAAAKGGVEQKKSEFYMSSILIDCILCRQPFPELKCVWDRDRMPVYAAYKLL
Ga0233344_1030258Ga0233344_10302582F015054MIGMNVEDNLDGATNFIFWKSIVLILEENDLLKLVNEKVPELNVEEDKFHWRKSDARARRILVDSVRDHLVPQISQKKTTRKMFKT
Ga0233344_1032235Ga0233344_10322352F015054MILMKIEDHLDGATNFISWKSRVLILGENDLLKLVNEKVPEEDVEEDKSHWRKSDARARRILVNSLRDHLVTQILQMKTTMKMFKTLNE
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