NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300023050

3300023050: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-319



Overview

Basic Information
IMG/M Taxon OID3300023050 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0132900 | Gp0272156 | Ga0233353
Sample NameLeaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-319
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size117736192
Sequencing Scaffolds12
Novel Protein Genes12
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available12

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil And Plant Litter Microbial Communities From Temperate Forests In California, United States
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biome → litter layer → plant litter
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: California
CoordinatesLat. (o)40.2526Long. (o)-123.026Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011735Metagenome / Metatranscriptome287Y
F015054Metagenome257Y
F091248Metagenome107N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0233353_1005113Not Available1294Open in IMG/M
Ga0233353_1006642Not Available1160Open in IMG/M
Ga0233353_1007554Not Available1103Open in IMG/M
Ga0233353_1017411Not Available788Open in IMG/M
Ga0233353_1018149Not Available776Open in IMG/M
Ga0233353_1018471Not Available771Open in IMG/M
Ga0233353_1018892Not Available764Open in IMG/M
Ga0233353_1019708Not Available751Open in IMG/M
Ga0233353_1022940Not Available707Open in IMG/M
Ga0233353_1024389Not Available690Open in IMG/M
Ga0233353_1030296Not Available632Open in IMG/M
Ga0233353_1041840Not Available550Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0233353_1005113Ga0233353_10051131F015054KMIGMKVEDHLDGATNFISWKSRVLILGENDLLKLVNEKVLEQDVEEDKSHWRKSDARTRRSLVNTVRDHMGPQILQTKTTMKMFKILKE
Ga0233353_1006642Ga0233353_10066421F015054QTLSLGSLILGENDLLKLVNEKVLEEDVEENKSHWRKSDARARRILVNSVRDHLVPQILQTKTTMKMFKTLKE
Ga0233353_1007554Ga0233353_10075541F091248MIHLRKDILLHNVHKFKLLKCHNVFTLQEEFTMSKRQKRKAPAVEEQTAIEVVPQKEYIYEDTQCISGIEPEYEWGEIYRLISRREVPDTGLEEEPIYANIEKSAIMKVATRPELFPCSDVMRWILPHTNNNTMLMGNVEGQGYAAFSPGYVALAYHLPETQVFLSNDWLDNLRMDLVETLRRMLLPGKLYRHRATEDYDTASLRAPYRFIALMLNRIFGRANG
Ga0233353_1017411Ga0233353_10174111F015054MIGMKVEDHLDGATNFISRKFRVLILGENDPLKLVNEKVQKQNVEEDKSHWRKSDARARRILVNSVMDHLVTQILQTKTTMKMFKTLKE
Ga0233353_1018149Ga0233353_10181491F091248MSRRQKKKAPVVEEQTAIEADLPTEYIYEDTQCVTGLDPEYKWGDIHRMISRREVPDMGLEEEHIYANIEKSAIMKVATRPEMFPCAELMRWILPHTNHGSMLICNVAGQGYASFSPGYVALAYHLPEPQVFLSNEWLDNIRMDLIETMKRMLLPGKLFRHRVTEDYDTATLRPLYRFIALMLNRIFGRANGRLFKFEWIPLMFYVATEGTIFNWSGLVSSSLASCIAVEKGG
Ga0233353_1018471Ga0233353_10184711F015054GKMIGTKVEDHLDGATNFMSWKSRVLILEENDLLKLVNEKVQKLDSEEDNYHWRKSDGRARRILVDSVRDRLVPQISQKKMTKKMFRTLKE
Ga0233353_1018892Ga0233353_10188921F015054MIGMKVEDHLDGATNFISWKSRVLILDENDLSKLVNEKFLEAGVDEDKSHWKKSYARARRILVDSVRDHLVPQISRKKTTRKMFKTLK
Ga0233353_1019708Ga0233353_10197081F015054MIGMKVEDNLDGATNFIFWKSIVLILEENDLLKLVNEKVPEPNVEEDKSHWRKSDARARRILVDSVRDHLVSQISQKKTTRKMFKTLKE
Ga0233353_1022940Ga0233353_10229401F015054MIGMKVEDNLDGATNFIFWKSIVLILEENDLLKLANEKVPEPNVEEDKSHWRKSDARARRILVDSVKDHLVPQMSQKKTTMKMFKTLKE
Ga0233353_1024389Ga0233353_10243891F091248VPAAEVETRIEYIYEDTQCVTGVEPEYKWGDVYRMISRREVPDMGLEEAPIYANIEKSAIMKVATRPELFPCSELMRWVLPHTNHNSMLICNVDGQGYAAFSPGYVALAYHLPEPQLFLTDRWLDDLRMDLVETLKRMLLPGKIFRHRVTEDYDTATLRPTYRFIALMLNRIFGRENGRLFKLEWVPIMFFIATEGTIFNWASIVSSNLSSCVAAASEGKERRRSEFYM
Ga0233353_1030296Ga0233353_10302962F011735MWHGPYVVKHVLEKGAYELVDYEGTALAEPRNGLYLKKYYA
Ga0233353_1041840Ga0233353_10418401F015054MIGMKVEDNLDGATNFIFWKSIVLILEENDLLNLVNEKVPEPNVEEDKSHWRKSDARARRILVDSVRDHLVPQISQKKTTRKMFKTLNE
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