Sample 3300023107

Basic Information
IMG/M Taxon OID	3300023107 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095510 \| Gp0290899 \| Ga0247729
Sample Name	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L133-311R-2
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	691982176
Sequencing Scaffolds	29
Novel Protein Genes	29
Associated Families	3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricineae	3
Not Available	26

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → agricultural field → plant litter
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	USA: Wisconsin
Coordinates	Lat. (^o)	43.3	Long. (^o)	-89.38	Alt. (m)	N/A	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F034190	Metagenome / Metatranscriptome	175	Y
F065285	Metagenome	127	Y
F067268	Metagenome	125	Y

Scaffold	Taxonomy	Length	IMG/M Link
Ga0247729_10007520	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricineae	3791	Open in IMG/M
Ga0247729_10016939	Not Available	2606	Open in IMG/M
Ga0247729_10019665	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricineae	2435	Open in IMG/M
Ga0247729_10035012	Not Available	1846	Open in IMG/M
Ga0247729_10035051	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Agaricineae	1845	Open in IMG/M
Ga0247729_10035492	Not Available	1833	Open in IMG/M
Ga0247729_10036648	Not Available	1804	Open in IMG/M
Ga0247729_10038109	Not Available	1768	Open in IMG/M
Ga0247729_10045153	Not Available	1622	Open in IMG/M
Ga0247729_10045329	Not Available	1618	Open in IMG/M
Ga0247729_10051393	Not Available	1517	Open in IMG/M
Ga0247729_10052328	Not Available	1503	Open in IMG/M
Ga0247729_10055303	Not Available	1461	Open in IMG/M
Ga0247729_10081704	Not Available	1182	Open in IMG/M
Ga0247729_10089282	Not Available	1126	Open in IMG/M
Ga0247729_10090493	Not Available	1117	Open in IMG/M
Ga0247729_10099356	Not Available	1061	Open in IMG/M
Ga0247729_10101554	Not Available	1048	Open in IMG/M
Ga0247729_10103462	Not Available	1037	Open in IMG/M
Ga0247729_10105938	Not Available	1024	Open in IMG/M
Ga0247729_10108631	Not Available	1010	Open in IMG/M
Ga0247729_10112792	Not Available	989	Open in IMG/M
Ga0247729_10117745	Not Available	966	Open in IMG/M
Ga0247729_10132875	Not Available	903	Open in IMG/M
Ga0247729_10179027	Not Available	764	Open in IMG/M
Ga0247729_10195364	Not Available	727	Open in IMG/M
Ga0247729_10198873	Not Available	720	Open in IMG/M
Ga0247729_10247877	Not Available	636	Open in IMG/M
Ga0247729_10262512	Not Available	616	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247729_10007520	Ga0247729_100075204	F067268	MYIILELLDGQHEQLLDILQSYFRHAATYNPVTADAGCTTYFSKVGMDFIFQSAYAASKLKPTSPLFSRHVNVFQSLASDLRDFYEDPETGPSPDYLFFASFAYAYWLLSWHSNIITTETGRDLILAILQYRERAIPRKDLEDGFYNLNSYGGTFDHDWSQFVNRARVLGIVVPSLAQEPPADLPPLESAEIHGEPDHPSGDVVVEVLQDCHASIRSSSKTNDE
Ga0247729_10016939	Ga0247729_100169391	F067268	MGRNLFSTSPLQYQRAARYVHGIYLVLPHSNYLLYTILEFLDRQDQILDILQSYFRHAATYNPDTADAGCTTYFSKARMDFIYDLASIASKLEPTSPLFSRHVNILQSLASDLRAFHDDPEAGSSPDYLFFASFTYVFWFLDFESDTITSETGRDLILAILQYREHVIPRKDIEDGFYNLNNFGRTFDQAWSKFLDKARALGIVVPSLAQEPPTDLEPAEIEKLHLSSGDAVVEVFHDLHVPIRSSSKTDHE
Ga0247729_10019665	Ga0247729_100196652	F067268	MYIILELLDGQEQHLDILQSYFRHAATYNPDTAAAGCTTYFSNVGIDFIFESAKAASKLEPTSPLFSPHVNVLQSLASGLRDLHENPEAGPSPDYLFFASFAYAHWLLFFRSDIVTTETGRDLILAILQYRERIIPRKDFEEGFYNLNYFEWKFENTWSNFVDKARALGIVIPPLAQEPPADLPPLEYAEIQEEPDHPSGDAVVEVLHDHHASIRSSSKTVDS
Ga0247729_10035012	Ga0247729_100350122	F067268	LELLDGQEQLLDILQSYFRHAATYNPDTADAGCTTYFSNIGIDFILESARATFKLKPTSPIFSPHANVLQSLASDLRDLHEDPEAGHSPDYLFFASFAYAYWLLIWDSDIITTETGRDLILAILQYRERVIPRKDLEDGFYNMNIYGQKFDDDWSEFVDNARALGIVVPSLAQEPPADLLSLKSAEIQEELDHPSGDAVVEVSHGHHSSIRSSSKIDDE
Ga0247729_10035051	Ga0247729_100350512	F067268	MYIILELLDGQEQFLDILQSYFRHAATYNPDTANAGCTTYFSNVGMSFIFQSACAASTLKPTYPLFSRHTNILQSLASDLRDLHEDPEAGSSPDYLFFASFAYVFWLIFWESDTITTETGRDLILAILQYRERVIPRKDLEAGFYNSNIDGWTFDNHWFNFVNEARVLGTVIPPLAQEPPADLPPLEYAEIQEEPDHPSGDAVVEVLHDHHASIRSSSKTVDSQCTESGLGATSTVEELGEKINGVEVLAT
Ga0247729_10035492	Ga0247729_100354921	F067268	MYMILELLDGQEQLLDILQSYFCHAVTYNPDTADAGSTTYFSRVGMDFSFQSAYAASKLKPTSPLFSQHTNVLQSLASDLRGRHEDPEAGPSPDYLFFASFAYAYQLLSWDSELITTETGRDLILAILQYREHVIPRKDLEEGFYNSNIYGRKFEDDWSEFVDEARELGIVVPPSAQEPSVDPPSLESAEIQEEPDHPSGDAVVEVLHDHASVHSSSKTDDE
Ga0247729_10036648	Ga0247729_100366481	F067268	GIDFIFQSARAASEFKPTSPLFSRHTNVLQSLASDLRDLHEDPEAGPSPDYLFFASFAYANRLFFWDSDTIVTETGRDLILAILQYRERIIPRKDLEDGFFTSNIYGQKFDDDWSEFVDKARALGIVVPSLAQEPPAALPPLESAEIQEEPDHPSGDAVVEVLHDCHASIRSASKTDDE
Ga0247729_10038109	Ga0247729_100381092	F065285	RHLALYEQYVPPLLQLYERHCPGFCARLALGYKGRGLDRSSTEIWWNEPCALVPIVHPQRWDLGDPELTRIYVLQSGVHPLLESILAPRVPQIYLETALSCLRYLQSGGHSVKSRKSLKPLLGSRYFMRLKMRPSLSRFRIRRHRHSSWRCLLDEQDLHSMWWGDHPERPYDSIHRKIGVRVPLRFFSYRSEYASNYDLWCTYRYALQLLPLVLANAPPDLHLAFIATNCIFSSFCTAYPQETRRAKKSIARYLHRCRPIRALRERVVVDVMSGMNVD
Ga0247729_10045153	Ga0247729_100451532	F065285	LALAISPILHPERWDPNGPELTEIWLTNELHPLLASILAPRVPQIYLETALSCLRYLQSGGHSVKSRKSLKPLLKSRYFTRLKMRPSLSRFRSRRHYHSSGRYLMDKGRLRSEWWGNHLMRPNDRIQYKVNMIPKSGVVVPLCFFSYRSKYASNYDLWRAYQYALQLLPIVFANALPDSNLASIATNCIFNSFCTAYPQETRIAKESIAQYLHRCRPIRARPLRGRIIMDGMDGMDVD
Ga0247729_10045329	Ga0247729_100453292	F065285	MLQSGVHPLLESILAPRIPQIHLETALFCLRYLQSGGHSVKSRKSLKPLLKSRYFARLKMRPSLLRFRNRRHRHLNRRCLLDAQDLHSTWWGDHLERPNSYIELEDRELEGVQVPVCFFSYRLEYASNYDLWYTYRSALQLLPLVLANSPPDPHLALIATNCIFSSFCTAYTQETRRAKKSIARYLSRCRPIGAMPSRGRIVVDFMSGMNVD
Ga0247729_10051393	Ga0247729_100513932	F065285	VLCSRHLELYAQYIPPLLQFYERHSPGFSAILVLSYKGQALPRFPTEIWWRNPLVLAPIVHPQRWDPDDPELTRITVLQSGVHPLLASILAPRVPQIHLETALSCLCYLQSGGHSVKSRKSLKPLLRSSYFTRLKIRPSLSRFRKRHHHSSGRCLLDEQDLYSTWWGDHPERPKDYIILKNDARSKSGIQVPLYFYSVRSKYASNYELWYTYRYALELLPLVLANAPPDSHLRFIATNCIFSSFCTAYPRETKKAKKSLTRYLSRCRPIRAIRERVVVDVMSGMNVD
Ga0247729_10052328	Ga0247729_100523282	F065285	MCILAKFYTITRMSLIICKTRYVHSSMNRISDLDDIKSRHSKAETLYSRHLGLYEKYVAGLLQLYERHCPGFCAMLALDHKRQDLRRPSTGIWWENPLVLAPIVHPQRWDLDDFELTEIYMPESGFHPLLSSILAPRVPEIYLRTALSCLRYLQAGGHSVKSRKSLKPLLKSRYFTRLKMRPSLSRFRNRRHRHSSRRCLLDEQDLHSMWWGDRPEHPSDRYIQVIHNSGRDYKHGIRVPLHFFSYRSEYASNYDLWYTYRCALQLLPLFLAKSPPDFHFASIATNCIFSTFCTTYSQETRKAKKSIARYLCRCRPIEAIPLRGSISVDVMNGMDVD
Ga0247729_10055303	Ga0247729_100553032	F067268	VHGVIPHLTAFQTNVIVLELLDGQEQLLDILQSYLRHAQTYNPDAADAGSTTYFSKVGIDFIYDLATVASTLKSTSPLFSRHVNVLQSLASDLQDLHEDPEAGPSPDYLFFASFAYADRLLLWHSDTIATETGRDLILAILQYRERVIPRKDFEDGFYNMNVYDQKFDNKWSEFVDKARALGIFVHSLAQDPLADLAPLESEELHHSSSDAVVEVLHDYHASTRSSSKTDDE
Ga0247729_10081704	Ga0247729_100817041	F067268	HFKLMYIILELLDGQDQLLDILQSYFRHAATYNPDTADAGSTSYFSEVGMDFINELARIASKLKPTSSLFSRHTKILQSLASDLRDLHEDPEAGPSPDYLFFASFAYAHGLLVGESDIITSETGRDLILAILQYRKRVIPRKDLEDGFYNLNVYGREFDDDWSYLADNARALGILVPPLTQEPPADLPALESAEIQTEPDHPSGDAVVEVFPDLHTSTRSSSKTDDE
Ga0247729_10089282	Ga0247729_100892822	F065285	LETALSCLRYLQSGGHSVKSRKSLKPLLKSRHFTRLKMQPSLSRFRKRHHHSSGRCLLDGQDLYSTWWGDHPRRPEDYMICKLNKMDLKPGIRVPLYFYSFRSKYASNYDLWYTYRSALQLLPIFLANSPPDSHLASIATNRIFSTFCTAYPRETRKAKKSITRYLSRCRPIRAIRKRVVVDVMSGMNVD
Ga0247729_10090493	Ga0247729_100904931	F065285	XFGXHYIKAFKSRNALYSRHRELYEQYVPPLLQLYEQHCPGFCAILTLGYKGQCLPCLSTEIFSRNPLVLVPIVHPQKWDPDDPKLTRTYVPESGLHPLLASILAPRVPQIHLETALSCLHYLQSGGHSVKSRKSLKPLLKSRYFTRLKMRPSLSRFRKRRHHHSSGRCLLDAQYFCSTWWGDHLKRPYDYRNSLVDEGIYVPLHFFSYGSEYASNYDLWYTYRCALQFLPLFLENSPPDSQLVSIAANCIFSSFCTAYPRETRKAKKSIIHYLSRCQPIRAIRERVVVDVMSGMNVDRG
Ga0247729_10099356	Ga0247729_100993562	F065285	CTVIFSRNPLIFSPIVHPQQWDPDDPELTGIYVPVSAVHPLLAFILAPRVPQIHLETALSCLRYLQSGGHSVKSRKSLKPLLKSKYFTRLKKRPSLSRFRKRQHHDSSGRCLLDEQDLHSVWWGDHPERPIKYTFRKVNCDMHGILVPICFFSYRSEYVSNYDLWYTYRSALQLLPIFLANSPPNAHLASIATNCIFNTFCTAYPRETRKAKKSITRYLSRCRPIRAIRERVVVDFMSGMNVN
Ga0247729_10101554	Ga0247729_101015541	F067268	CTTYFSKVGIDFIFQSAYAASKLKPTSPLFSRHVNVFQSLASDLRDLHEDPKASPSPDYLFFASFTYAYWLLSWDSNIITTETGRDLILAILQYRERVIPRKDIEDEFYNSYGWKFDNHWSRFVDKARELGILVPPLAQEAPAVLPPLEAAEIQELHHSSGDAVVEVLHDHRTFTHSSSKADDE
Ga0247729_10103462	Ga0247729_101034621	F067268	CSKLYPKTVSEHHACYVCQRCNTSGQHMGRDVFSTELLECGRSARYVHGIYLIQPHFKLMYIILELLDGQEQLLDILQSYFRHAATYNPDTPDAGCTTYFSDVGVDFVFESAKAASTLKPTSPLFSRHVNVLQSLASDLRDRHEDPEAGPSSDYLFFASFAYANRLLFWESDIIATETGRDLILAILQYRERVIPRKDLEDGFYNMNIYGQKFDNDWSEFVDKARALGIVVPSLTQEPPADLPPLESAEMQEELDHPSGDAVVEVSHGHHSSIRSSKIDDE
Ga0247729_10105938	Ga0247729_101059381	F065285	RVPQIHLETALSCLRYLQSGGLSVKSRESLKPLLKSRYFTRLKMRPSLSRFRNRRHHHSSNHYVLDNNDLRSTWWEGNYMDRPHTYIFRLHYHKSGVLVPFCFFSYRSQYASNYDLWYTYRYALQFLPLFLVNSPPDFHLASSATHCVFNTFCIAYPQEARKAKKSIAQYLHRCQPIRAMNGIDID
Ga0247729_10108631	Ga0247729_101086311	F065285	ARISIPESRVHPLLASILAPRVPQIHLETALSCLCYLQSGGLPLKSRKSPKPLLKSRYFTRLKMRPSFSRSRKGLHHHPSGRCLLDEQDLHSTWWGNHPKRPNYYIHWSCKTGVLVPLFFFSYRSEYASNYDLWYTYRSALQLLPLVLANSPPDSYLAYIVTNCIFSSFCTAYPQETRKARKYIARYLRQCQSTRATSGGVVMEVMSGMDVDSHPVSMDAKSHGT
Ga0247729_10112792	Ga0247729_101127922	F067268	MYIILELLDGQQEQLLDILQSYFRHAATYNPDTADAGCTTYFSKVGIDFIYESARAASKLKPTSPLFSPHVNVLQSLASDLRGLHEDSEAGPSPDYLFFASFAYARWLLVHESDTITTETGRDLILAILQYNDRVIPRKDFEDGFYNSKIYEWKFDNHWSEFVGKAIALGILVPPLAQEPPADLPPLESAEIQEELDHPSGDAVVEVSHGHHASTRSTSKTDDE
Ga0247729_10117745	Ga0247729_101177452	F067268	MYIILELLDGQREQLLDILQSYFRNAATYYPVAANAGCTTYFSKVGMDFIFQSAMGASELTPTSPLFSRHVNVLQSLASDLRDRHEDPETGPSPDYLFFASFAYAYWLLYWDSDTIVTETGRDVILAILQYRERVIPQKDFEEGFYNLNIYGWKFDDTW
Ga0247729_10132875	Ga0247729_101328751	F065285	LGKPLVLAPIVHPQRWDPDDPELTDPYMPELGVHPLLASILAPRVPQIHLETALSCLRYLQSDGHSAKSRKSLKPLLKSSYFMRLKMRPSLSRFRQRRHCHSSGRCLLDEQDLHSMWWGDHPERPYDCIRRKQGVRVPLRFFSYWSEYASNYDLWYTYRCALQLLPFVLANTPPDSHLTSIATNRIFSTFCTAYPRETRKAKKSITRYLSRCRPIR
Ga0247729_10179027	Ga0247729_101790271	F065285	ARLALCYKGLFLDRSSTDILWGVPLVLAPIVHPQRWDPDDPELTQISVLQLGVHPLLASILAPRAPQIHLETASSCLRYLQSGGHSVKSRKSLKPLLKSRYFTRLKIRPSLSHFRNRLHRHSSRRCLLDTQDLHSMWWGDNPKRPSDGYTIRNVSRDYKHGIRAPLHFFSYRSEYASNYDLWFTYQSALQLLPLVLANAPPDSHLASIATNCIFNSFCTAYPQETRRAKKSITQYLSRCRPIKAIRERVVVDGM
Ga0247729_10195364	Ga0247729_101953641	F067268	MYVILELLDCQEQLLDILQSYFRHAATYNPDTTDAGCTTYFSKVGMSFIFKSAYAASELEPTSPLFSPHTNVLQSLASDLRDLREDPEAGPSPDYLFFASFAYANQLLFRESELITMETGRDLILAILQYRERVIPRKDFEDEFYNSYGWKFDDDWPKFVDKARALGIVVPSLAQEPPADLPPLESAEIHKEPDHPSGDAVVEVSHDHHTSIRSTSKTDDE
Ga0247729_10198873	Ga0247729_101988731	F067268	MYIILELLDGQEQLLDILQSYFRHAATYNPDTTDAGCTTYFSKVGMSFIFQSARAATELNPTSPLFSRHTNVLQSLASDLRDLHEDPKAGPSPDYLFFASFAYAYRLLSWDSDIITTATGRDLILAILQYHERVIPRKDFEEGFYNVKFLGWIFDDNWSEFVDMARALGIVIPPLAQEPPADLPPLESAEIQEELDHPSGDAVVEVSHGHHSSIRSSSKIDDE
Ga0247729_10247877	Ga0247729_102478771	F065285	RWDPDDPEFTRIYIPELESGLHPLLASILAPRVPQIHLETALSCLRYLQSGGHSVKSRKSLKPLLKSRYFTRLKMRPSLSRFRKRRHHHSSRRYLLEERDLHSMWWGDYPERPTDYVFRNVNSDFKHGILVPLCFFSYRSEYASNYDLWCTYQSALQLVPLVLVNAPPDSHLASIATKCIFSSFCTAYPQETRRAKKSIARYLRRCRSIRA
Ga0247729_10262512	Ga0247729_102625121	F034190	AADLHDLNGPEISKWIKKECSATLLSAAAAASAVTDAIAASHSTLTRWLQQLHHCLLRSGDWSAADIDAWRSVVSDIHQHWCAETSQKAFPKLHMLHHSIDFAERHRFLGRASEAQIESCHAFFNSLVHKQHRNQSGNTAERLRRCLADASLRAVQPLLQP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300023107: Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L133-311R-2

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences