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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300023200 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133503 | Gp0295767 | Ga0256611 |
| Sample Name | Activated sludge enriched bacterial communities from WWTP in Fort Collins, Colorado, USA ? LHP |
| Sequencing Status | Finished |
| Sequencing Center | Argonne National Laboratory |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 174807749 |
| Sequencing Scaffolds | 1 |
| Novel Protein Genes | 3 |
| Associated Families | 2 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Ppcp Degradation By Aerobic Enrichment Cultures (Carbon Source) |
| Type | Engineered |
| Taxonomy | Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Ppcp Degradation By Aerobic Enrichment Cultures (Carbon Source) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Fort Collins, Colorado, USA | |||||||
| Coordinates | Lat. (o) | 40.585258 | Long. (o) | -105.084419 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F041209 | Metagenome / Metatranscriptome | 160 | Y |
| F093130 | Metagenome / Metatranscriptome | 106 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0256611_1182390 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria | 1536 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0256611_1016824 | Ga0256611_10168241 | F093130 | QVRVFDSRGLRSHGLLGQTWRQTTYPNAIKHVQGEVDDYVIREGDVFGDSFVYNAFN |
| Ga0256611_1182390 | Ga0256611_11823901 | F041209 | MRRKLQKIGRKHVLFLDETALRLSEAATHTIVLPGEQPFVLATETTSYSARYDMIACCVGDRVLVPKIFSPAERKGADVRGINRAMLLQFVDDVLAQAVEGLDRYPLTLVLDRATVHKNVDVLRQAFADRASESIKDILLMPANAAKRMSPLDNALFHDWKEECRKHTPATKRTIVRIMSDAWNKMKPGPHYKHAGLVRGQDPYFDCPAPDVHRHGE |
| Ga0256611_1238091 | Ga0256611_12380912 | F093130 | MYLNQKVHVSDKRSLRSHGLLGQTWRKATYPNAIKHVQGVVDDYVIREADVFGDSFVYNAFN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |