NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300023489

3300023489: Human gut microbial communities from healthy child feces in Northridge, California, USA -- CDI_129B



Overview

Basic Information
IMG/M Taxon OID3300023489 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133482 | Gp0296382 | Ga0257030
Sample NameHuman gut microbial communities from healthy child feces in Northridge, California, USA -- CDI_129B
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of California, Irvine
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size103091033
Sequencing Scaffolds9
Novel Protein Genes9
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii4
Not Available2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameChild Gut Microbiome
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut → Child Gut Microbiome

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: Northridge, California
CoordinatesLat. (o)34.2381Long. (o)-118.5301Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032286Metagenome / Metatranscriptome180Y
F042936Metagenome157N
F047126Metagenome150N
F055775Metagenome138N
F062845Metagenome130N
F068811Metagenome124N
F076189Metagenome118N
F087334Metagenome110N
F092227Metagenome107N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0257030_100059All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii143229Open in IMG/M
Ga0257030_100212All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii72097Open in IMG/M
Ga0257030_100416Not Available45110Open in IMG/M
Ga0257030_100669All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales31140Open in IMG/M
Ga0257030_101216All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii16849Open in IMG/M
Ga0257030_101349All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis15096Open in IMG/M
Ga0257030_102749All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii7117Open in IMG/M
Ga0257030_103490Not Available5526Open in IMG/M
Ga0257030_108365All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae2329Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0257030_100059Ga0257030_100059159F068811MDQDGSEHNICPNRKGLCPGKEQHGASGWKKIFQHGKESLRNKDSISQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRI
Ga0257030_100212Ga0257030_10021217F076189VLSAGHCFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLRAIQSAQKQLRMLYNFHENTFGLLIFYANYAIL
Ga0257030_100416Ga0257030_10041645F055775MAQIAQQDNLVIEVTTTAAALDGATKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVNTTGDSPKYTIDIINANSGAVEAIALN
Ga0257030_100669Ga0257030_10066929F032286MVKWVCQIVTPIRHRALVFNTRLFAGTAADDALVTGSTLSFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTEQKTISPFSLALILTFDFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAL
Ga0257030_101216Ga0257030_1012164F092227MNEQKRKRILRAGCLLLAGVFLLSVLGSVVLMLLV
Ga0257030_101349Ga0257030_1013495F087334MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILPYPFRSSPLLAITFLYHPKDFFLYRAVALFEYREKHQ
Ga0257030_102749Ga0257030_1027499F062845WTEKGDSMKKTPFILHEKFRSDNNEQRKERFQKEFERYIIDGLLNAVPPRSCA
Ga0257030_103490Ga0257030_1034907F047126VYLKTKKMTNISQTQAGFKSKSLGSLCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC
Ga0257030_108365Ga0257030_1083653F042936VWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGKG
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