NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300023490

3300023490: Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_70C



Overview

Basic Information
IMG/M Taxon OID3300023490 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133482 | Gp0296405 | Ga0257053
Sample NameHuman gut microbial communities from healthy child feces in Northridge, California, USA - CDI_70C
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of California, Irvine
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size87601834
Sequencing Scaffolds17
Novel Protein Genes23
Associated Families23

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes putredinis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia1
Not Available2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM1581
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Intestinimonas → Intestinimonas butyriciproducens1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameChild Gut Microbiome
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut → Child Gut Microbiome

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: Northridge, California
CoordinatesLat. (o)34.2381Long. (o)-118.5301Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029444Metagenome188Y
F032312Metagenome / Metatranscriptome180N
F043945Metagenome155N
F044555Metagenome / Metatranscriptome154N
F047755Metagenome149Y
F064817Metagenome128N
F067720Metagenome125Y
F067845Metagenome125N
F068811Metagenome124N
F068855Metagenome124N
F070133Metagenome123N
F072366Metagenome121N
F073656Metagenome120N
F076189Metagenome118N
F078003Metagenome117N
F080163Metagenome115N
F082714Metagenome113N
F089054Metagenome109N
F092227Metagenome107N
F101192Metagenome102N
F101193Metagenome102N
F101357Metagenome / Metatranscriptome102N
F105375Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0257053_100034All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes putredinis167192Open in IMG/M
Ga0257053_100056All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia136489Open in IMG/M
Ga0257053_100137Not Available84612Open in IMG/M
Ga0257053_100185Not Available70104Open in IMG/M
Ga0257053_100226All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes57999Open in IMG/M
Ga0257053_102150All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii6989Open in IMG/M
Ga0257053_103792All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium4430Open in IMG/M
Ga0257053_104684All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3763Open in IMG/M
Ga0257053_107212All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2694Open in IMG/M
Ga0257053_108145All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2468Open in IMG/M
Ga0257053_108329All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2431Open in IMG/M
Ga0257053_108891All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2321Open in IMG/M
Ga0257053_110017All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2114Open in IMG/M
Ga0257053_110491All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2042Open in IMG/M
Ga0257053_110559All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM1582031Open in IMG/M
Ga0257053_110625All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Intestinimonas → Intestinimonas butyriciproducens2021Open in IMG/M
Ga0257053_110901All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1983Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0257053_100034Ga0257053_100034111F073656MEQEQDQEQTQAALYVAVDDGNKIVAMERSRRGDEGFRALLDEFTDYAANRGEIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCCKYGLDPLAEGNCSNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEVDPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFADPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH
Ga0257053_100056Ga0257053_10005691F047755MEQKKVKYLIDMINNMDIKDKLRLAICMSQSKWSGLIYNTKKYYEKFDSMLKDIDEEYRTTLINFGKYKLVMFAMAKLMEMETTEQNKVALYLFNSIKH
Ga0257053_100137Ga0257053_10013738F064817MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDNPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEECRRICIQNIIERNINQENQDENETI
Ga0257053_100137Ga0257053_10013740F105375MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILNYSNNLMNLLVNAHVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVNFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0257053_100137Ga0257053_10013743F101357MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSESDIQEYNEWLNANQYKLYPLLLDILKISLKDNFYDYSNASNIHYEGGKFPSMLTIQLFNLEF
Ga0257053_100137Ga0257053_10013749F044555MKTTKPLSRITISQNGNQILTCKVYKEPNYILSMSNKEILELISGLDYMGNIPTVPDLEKPIEIQVSTTQQIPLEQNKEVQTKIKEIIYNNLHDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
Ga0257053_100137Ga0257053_10013752F080163MKTIKFLQESFETKERFQQEISFKYSYNRDTVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKNNFCNAKQFLESINDFDKILFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYTHRDLSFSTKLESEILDSEIELLQEKLDLIREEICKLIGVNPNLEKQGHEDNYIFNLNIDSDNQIGFFLQETEL
Ga0257053_100137Ga0257053_10013753F032312MPKIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALHDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0257053_100185Ga0257053_10018567F089054MLTKGKFLVSFKVPGHTKDYTEGFTEEMVILYRTEELNPYLRYPHQEINKNHLHSEFIMLRLREILQISDITIIDIIPLP
Ga0257053_100226Ga0257053_10022693F067720MASTTYEHFVDTNKMYAIRGRFLGLTKTYHLGNVNKLVTFCHRFAVIGNMVRNAGQLPQPFWLGAARGGGSCSLSASVARA
Ga0257053_102150Ga0257053_1021502F092227MNEQKRKRMLRIACLLLAGVFVLSLLGSIFMMLLF
Ga0257053_103792Ga0257053_1037925F101193MARKCTEYHYFKHTYWDAMAQYNWTRCPHCGKLCKPSRFKAATVLMPIELVIFVVCIFFRNSMNDAIGWFAAWLLFVLLLFLPQYIYVRFFMPYETLSEDETRKFRDLQEH
Ga0257053_104684Ga0257053_1046842F082714MVVGIRFAADAPVRTVLQAVLPIFPTADVDFLVREYWVCTVGSGLPEQRFTAQEMQAAVNALTPNEHAELFTIYVLPHDAPDTPPSSCEDFCARGFTMAFYAYDGDGYALLAQSEEQVEAAFEALTTAGLCEKVEEVEKETLAHWGF
Ga0257053_107212Ga0257053_1072122F072366MLDILAIKADVYQLERQGKRLPVYRYLREVWQKELPSEGLTVLALQQMVDYVEYVDDLTVLGEPWEVENEYDLYQDFLLDVISWGLQKYRAKKRLLWQICYYVNAWATFYYIFGREITQDNVEQWKKTLFEEAKERYPDSLLFEFIPHAAQLDYVWFYRLTDEQRLQIRLEVGEWNLQKNDMDQAVQSYFDDAMTWYRDNGRKLLEAKKQGK
Ga0257053_108145Ga0257053_1081452F068811MDQDGSEHNICSNREGLCPGKEQHGASGWKKIFRHGKEPLRNKDSASQYCNKKAAVLLILNENVSETLCIFSIDKTNCCRI
Ga0257053_108329Ga0257053_1083292F078003SPQLNRRFLESFHRHMGEQLTEAQWAALNRALEMDAVGAVEYKSRQALMQLVGAFSEPISPAKVCYLDTLGAEKEDSFLHYLQVLFCGALKVNALLFGCCDLGLFRQLQEAIHPVAQRVIVRIDHFIYAGEDEIVSNLVGIQPMVDQPCYHAYLVDAENCPQERLAHYRTGQMTFHVMHQDGSESTVALFLLGKNEFTATVMSTQDLWMSRKVLCDRERFSPIRLLWQLNDENSDFIVYTQQYCKMEHGAAIYYIRPDVPFQYIPLEVLYPVVREGFARMGMTREEYEPNVTALAEIHQARMTNMMRRRRPTYIVLNKAAMEEFVRTGRQSDHLHFLRNFTPKERKQILDVLVQQARENPFFHLYFAQEKLPYTMGEVALYDGRALITMSSGSGYDLRTDHRESCITHPFVLRAYKQFYMNTVVARLADTQTESLNQLEELVRRCEKMIREGQKGNAGNEQEKLSGQ
Ga0257053_108367Ga0257053_1083672F043945MTPNMEDIIWSEALKQSGYYGQVMLLSGGAELVLFSANEGRLYSFVPPTDDTMVRMQMVTELDYSTVPQMGWKKFPIAKDLYDVTVEQAVYDAENGLYVIAKDKTDEYQIVRFDVDTGKGEMMEFALEDEEDSHLMPDMPGFFRWSAESSKYERTLYDGKVLTMVNLPNGEATSVVHNLVNTLTLQPIQDYDVTLGDYVTHDAYYAYAPNKDNTAMYFVHDNTVWVMEYDEENSQFSEPRGIDKLPFFAEDTMCGFYWRGFYLIQTHDGLYLCHTGDETARAYLYGEVE
Ga0257053_108891Ga0257053_1088912F067845MKHWKNLLVCLLVGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALNADNNMSHTDDLNAFLYWSGCYGVPDDVTVALLLDDSTAMTAQLYAPQADSAAAELLEDAAGHSELGAAFIDYNGTAYVVAVFR
Ga0257053_110017Ga0257053_1100171F070133EPVELYSVTHTPNGSFVVIYFAEGEKTELQEMWMELFDSVGTSLLSAKLGEFDPNGEKIPHGQIILKKDRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTTKKLKFGAAPYAQHVGDYMVEKQAHSEDETPFRTVKITHIASGKSKKLRIYDWSFCACSDQDGNLLIGQQNEKGNLEIRSYNAAMQESIVELSGDFLQNSYISDAACIGQTVYFDIYLTNQQSEILFYDMKQQNITDSQTLHTANDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEHFETSRLPLQHESCLYIFTDVEQADVTTIEMDEKSHSYFVCSYSISAGE
Ga0257053_110491Ga0257053_1104913F076189MPGRLCYLPGIAFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLRAIQSAQKQLRMLCNFHENTFWLLIFYANYAIL
Ga0257053_110559Ga0257053_1105592F068855VEAQGPQARKTLAPQGLQAEKEREKANVRNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGTVW
Ga0257053_110625Ga0257053_1106254F029444MEVSGQLTGFELEDLMSWTVSNLQRPFREDFSLEKSGIIAEKESQIFGRRFVGFDGPKKAAPFFNF
Ga0257053_110901Ga0257053_1109013F101192MTYWGWLLVDITLLLTALSGTQTSLCQRMRSVPVYRGLTYWEVQQIAKAAPTSITPCGEDTIRRWVSGRYQIALRFNRYDVCLGVEEEIDG
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