Sample 3300023675

3300023675: Metatranscriptome of spruce litter microbial communities from Bohemian Forest, Czech Republic - CLI5 (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300023675 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128948 \| Gp0290751 \| Ga0247533
Sample Name	Metatranscriptome of spruce litter microbial communities from Bohemian Forest, Czech Republic - CLI5 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	11834181
Sequencing Scaffolds	63
Novel Protein Genes	64
Associated Families	56

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	55
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomyces → unclassified Planctomyces → Planctomyces sp. SH-PL62	1
All Organisms → cellular organisms → Eukaryota	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1
All Organisms → Viruses → Riboviria → Orthornavirae	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Pucciniomycotina → Pucciniomycetes → Pucciniales → Pucciniaceae → Puccinia → Puccinia coronata → Puccinia coronata var. avenae → Puccinia coronata f. sp. avenae	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → litter layer → plant litter
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Czech Republic: South Bohemian Region
Coordinates	Lat. (^o)	49.0448	Long. (^o)	13.618	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001380	Metagenome / Metatranscriptome	709	Y
F003050	Metagenome / Metatranscriptome	510	Y
F003199	Metagenome / Metatranscriptome	501	Y
F003383	Metagenome / Metatranscriptome	490	Y
F003395	Metagenome / Metatranscriptome	489	Y
F003497	Metagenome / Metatranscriptome	483	Y
F004473	Metagenome / Metatranscriptome	436	Y
F005081	Metagenome / Metatranscriptome	412	Y
F006591	Metagenome / Metatranscriptome	369	Y
F007311	Metagenome / Metatranscriptome	353	Y
F008172	Metagenome / Metatranscriptome	337	Y
F009043	Metagenome / Metatranscriptome	324	Y
F009606	Metagenome / Metatranscriptome	315	Y
F009688	Metagenome / Metatranscriptome	314	Y
F011999	Metagenome / Metatranscriptome	284	Y
F014264	Metagenome / Metatranscriptome	264	Y
F016923	Metagenome / Metatranscriptome	243	Y
F017080	Metagenome / Metatranscriptome	242	N
F017082	Metagenome / Metatranscriptome	242	Y
F018868	Metagenome / Metatranscriptome	232	Y
F018933	Metagenome / Metatranscriptome	232	N
F020912	Metagenome / Metatranscriptome	221	Y
F024793	Metagenome / Metatranscriptome	204	Y
F024939	Metagenome / Metatranscriptome	203	N
F027759	Metagenome / Metatranscriptome	193	Y
F030619	Metagenome / Metatranscriptome	184	Y
F030627	Metagenome / Metatranscriptome	184	Y
F031323	Metagenome / Metatranscriptome	182	Y
F032234	Metagenome / Metatranscriptome	180	Y
F034200	Metagenome / Metatranscriptome	175	Y
F038036	Metagenome / Metatranscriptome	166	Y
F038944	Metagenome / Metatranscriptome	164	Y
F040634	Metagenome / Metatranscriptome	161	N
F044105	Metagenome / Metatranscriptome	155	Y
F045560	Metagenome / Metatranscriptome	152	Y
F050386	Metagenome / Metatranscriptome	145	Y
F059538	Metagenome / Metatranscriptome	133	N
F060406	Metagenome / Metatranscriptome	133	N
F061214	Metagenome / Metatranscriptome	132	Y
F067292	Metagenome / Metatranscriptome	125	N
F068527	Metagenome / Metatranscriptome	124	N
F069734	Metagenome / Metatranscriptome	123	N
F071421	Metagenome / Metatranscriptome	122	N
F074242	Metagenome / Metatranscriptome	119	N
F079408	Metagenome / Metatranscriptome	115	N
F080064	Metagenome / Metatranscriptome	115	Y
F085182	Metagenome / Metatranscriptome	111	Y
F086415	Metagenome / Metatranscriptome	110	N
F089618	Metagenome / Metatranscriptome	108	N
F092084	Metagenome / Metatranscriptome	107	N
F093895	Metagenome / Metatranscriptome	106	N
F098181	Metagenome / Metatranscriptome	104	N
F102319	Metagenome / Metatranscriptome	101	Y
F103993	Metagenome / Metatranscriptome	101	N
F105213	Metagenome / Metatranscriptome	100	Y
F105688	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0247533_100154	Not Available	1919	Open in IMG/M
Ga0247533_100199	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	1785	Open in IMG/M
Ga0247533_100257	Not Available	1631	Open in IMG/M
Ga0247533_100384	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomyces → unclassified Planctomyces → Planctomyces sp. SH-PL62	1395	Open in IMG/M
Ga0247533_100513	Not Available	1247	Open in IMG/M
Ga0247533_100547	Not Available	1222	Open in IMG/M
Ga0247533_101078	Not Available	958	Open in IMG/M
Ga0247533_101203	All Organisms → cellular organisms → Eukaryota	918	Open in IMG/M
Ga0247533_101336	Not Available	882	Open in IMG/M
Ga0247533_101358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	878	Open in IMG/M
Ga0247533_101398	Not Available	866	Open in IMG/M
Ga0247533_101417	Not Available	864	Open in IMG/M
Ga0247533_101466	Not Available	852	Open in IMG/M
Ga0247533_101477	Not Available	851	Open in IMG/M
Ga0247533_101497	Not Available	848	Open in IMG/M
Ga0247533_101498	Not Available	848	Open in IMG/M
Ga0247533_101501	Not Available	848	Open in IMG/M
Ga0247533_101550	Not Available	838	Open in IMG/M
Ga0247533_101560	Not Available	836	Open in IMG/M
Ga0247533_101618	All Organisms → cellular organisms → Eukaryota	826	Open in IMG/M
Ga0247533_101693	Not Available	815	Open in IMG/M
Ga0247533_101719	Not Available	811	Open in IMG/M
Ga0247533_101744	Not Available	808	Open in IMG/M
Ga0247533_101792	Not Available	802	Open in IMG/M
Ga0247533_101795	Not Available	802	Open in IMG/M
Ga0247533_101893	Not Available	787	Open in IMG/M
Ga0247533_101937	Not Available	781	Open in IMG/M
Ga0247533_102090	Not Available	761	Open in IMG/M
Ga0247533_102209	Not Available	746	Open in IMG/M
Ga0247533_102225	Not Available	744	Open in IMG/M
Ga0247533_102300	Not Available	735	Open in IMG/M
Ga0247533_102303	All Organisms → Viruses → Riboviria → Orthornavirae	735	Open in IMG/M
Ga0247533_102636	Not Available	695	Open in IMG/M
Ga0247533_102637	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Pucciniomycotina → Pucciniomycetes → Pucciniales → Pucciniaceae → Puccinia → Puccinia coronata → Puccinia coronata var. avenae → Puccinia coronata f. sp. avenae	695	Open in IMG/M
Ga0247533_102798	Not Available	681	Open in IMG/M
Ga0247533_102906	Not Available	671	Open in IMG/M
Ga0247533_102944	Not Available	667	Open in IMG/M
Ga0247533_102947	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	667	Open in IMG/M
Ga0247533_102996	Not Available	662	Open in IMG/M
Ga0247533_103174	Not Available	647	Open in IMG/M
Ga0247533_103250	Not Available	642	Open in IMG/M
Ga0247533_103345	Not Available	636	Open in IMG/M
Ga0247533_103551	Not Available	621	Open in IMG/M
Ga0247533_103619	Not Available	617	Open in IMG/M
Ga0247533_103728	Not Available	610	Open in IMG/M
Ga0247533_103846	Not Available	603	Open in IMG/M
Ga0247533_103872	Not Available	602	Open in IMG/M
Ga0247533_104180	Not Available	586	Open in IMG/M
Ga0247533_104217	Not Available	584	Open in IMG/M
Ga0247533_104529	Not Available	570	Open in IMG/M
Ga0247533_104540	Not Available	570	Open in IMG/M
Ga0247533_104734	Not Available	562	Open in IMG/M
Ga0247533_105001	Not Available	550	Open in IMG/M
Ga0247533_105056	Not Available	547	Open in IMG/M
Ga0247533_105089	Not Available	546	Open in IMG/M
Ga0247533_105191	Not Available	541	Open in IMG/M
Ga0247533_105200	Not Available	541	Open in IMG/M
Ga0247533_105292	Not Available	538	Open in IMG/M
Ga0247533_105302	Not Available	537	Open in IMG/M
Ga0247533_105303	Not Available	537	Open in IMG/M
Ga0247533_105667	Not Available	524	Open in IMG/M
Ga0247533_106301	Not Available	506	Open in IMG/M
Ga0247533_106493	Not Available	500	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247533_100154	Ga0247533_1001541	F007311	KYVPSCWPPHFAVAPVTDYSMLDALRSPLRSDCSALRFLRPVPASDLTRRPTLSTPRLVQIAPHSTLCARAVHGSPRATDCSVVQHLELCPACGSLRPRWLTFHDALGLLLAHRFPPYGVPGLLRDRRVTLHAGLRIAPYSDALRPWPVHGFLRARS
Ga0247533_100154	Ga0247533_1001542	F089618	LLRPSATPAVRLQLSLPLLPLAAPVSNLRLASAALPPARPRANPPARIGVFSPGSTGGKHPARTVCYALPIDWLLTFQLALASGLQLGLRLLPTHIWCRPSARQVLRLPVLTGFRRNHRLAPVAAAAPTRAGCCPLLPHRPRTSDSHRLLFRRLCRSRLTQLALCAPTSGWAFDAPLASTEPCIAS
Ga0247533_100199	Ga0247533_1001991	F030619	RSLPEPPLRECVKHLQAAKLIASTEFPTSTAALESLRSFVALTPGVSGSGVLRHPRRLPSSSSSCLEWPATRGGIDGYLEHLGHMCEEAGATQSSFHAYAGDSLGAFCLRKASVVLRPCAGVAADLRESYRCAGLLYLRSQGKPFGMKATALRTPGYKVRVVGVPDCLTFVEGSWVRSSLRWLAPGHWRIDGESRKIPGGLHYRAGRRFASLDLSKATDGLSHPAVRVVIEGLALRGLIRLADLAMSMRSLGLERGATWSFPDLGDKIGEGSFLRGSPMGTPLSFVVLSWVNAWATSTFSRALTHGDDAVGRYTPGSLELDLYASRVASVGAALNREKTFKADHAWTACEIFALPRSHGEDKMTLFYPPSIPPPTLRAPVEADQRLENLWLRRMERVMKSRFPWIVRDPRLHLPVQVGGLGYTGRGLAVGVSVRRRLGALVSRGPSAVIAADLIGKKPFREVGLYPRPLCRVVRPGSYWKAVRVTEQWFQAGGDTHVPLESLLSFKSCLIEDEVRLLEGDKFKRKRVAGRPDRTRAGAVFRRLGVAPCRPLTRRWGCSALIRWASLSRESEVTVPEDIASEIRERIPDPT
Ga0247533_100257	Ga0247533_1002571	F103993	VPSRTPAPSQALFQVVTGLKLPGLLGLQATPVAVASQSARCIA
Ga0247533_100384	Ga0247533_1003842	F105688	YGAVNIPAGVTATVYGILFNVQADAAFDPLTASYDVRTGVSEGNGGTSIGSGTGAAVVVPTGRNFIGLNEYTVAVSWSTPLTLTTGEYWFNVTPQCLNTNDGSCSAFRQFFSNTTQGANDIHGNWQPAHELFLNSSFFGFTWANWCDSSLGFNANQCGYGSFGLRGSE
Ga0247533_100513	Ga0247533_1005131	F086415	MPSIEQEPLPRNALSSVRLRSSPVSRLGHRDSGSRRLFTPGRPLRSSRRPGPRPRAPLPTGVTLLWTSASLADFCNLKQRAGTPNERSILAREWGFHPATRWHQPMPVASARDTLPHRGPASLELHAPACARRVPLAWTGQNEGRVVRAKASRALLDDVARALLVATRAPGSPARSAMRPGGPRRTSRRPRSLFDASPRRATPSKEPGCLLPRRNPYASGGWLPRARLDRGFVTPPPERHCSETRAPLLPVLRRLLLTRKAPEPARLTAPGRPKPARNDQSQRPSRHLRSNQLAGRC
Ga0247533_100547	Ga0247533_1005471	F003199	MVTGISLVSDPEVPISSMVVVPVGARLVALHVRVTFTLPFAGGVTGLAEAVAETSVGNSFTLNVTAEWNPFTLVIVAVVDTLPLSSMVKEEGDSEIVKFFVPEEALTVRAMVVL
Ga0247533_101078	Ga0247533_1010781	F069734	MSPWLNRTLHPRLAPRMNLRVHSGHGKLDMASGAFFVPIRRFTIGKPTMNSPTETLTYALYHADVAVPTSYR
Ga0247533_101203	Ga0247533_1012032	F003050	MESVKAGAVAGEGKAVTSERFSFGKISCGASESVEAVAAKPAAGEQTDNAHGAPERDAQYGCMPVVSKAGNRAGTRMWNL
Ga0247533_101336	Ga0247533_1013361	F011999	DQIPATAVIVLSGGTPAAQTASITGVNVAVAFTDQQVVKFYSTGGVQRTGGATQATISYSDGPSNTLFFSTVLPSDVVVTDYIVVAGASYGSGNSILGIKAWDVNSNTGTIGGLNRNAYPGRLSTPTINLNGAALTPGIAQRAEVLLTRALGPDADSIKSGIWYGPLEQAFAQSNLMYNVQIVNAQEVKGDKTLDMSKRYFSDTFGGRKYHKSATFSANRMDLLVMENWYIGELSPLELYDFGGGNVVAPVPDIGGATGNASYLTSHMFAYNTCFNLANSAPRAGLYVQNAAVP
Ga0247533_101358	Ga0247533_1013583	F032234	VAGLGRGDDRSPFGGPPGAWQSGAVRAGGWDDSSVRNTSGFGDFGAEEDGSTRLVRPYTV
Ga0247533_101398	Ga0247533_1013981	F009688	AHPFGAAGFPTPFSTASGVSGLVAGPSNAFRPWILSEAFQLASAGGCATGLPTRSRHACNSFVRVLTTGSGSATAFGGAFARNHGSRLFTLKLLLFHSPAVSFLISPAFGSFSRGLPGRRVLPDAHTLFVRLSAFLIWRLQLFIFEPPESPAPC
Ga0247533_101417	Ga0247533_1014171	F031323	RVSRRIGGDWAFQRKSHMDSATTSVSSDPKGDLTVNLANDATFTRISKIWDRHRKQGLEDRHRTGALLNEKFGAPNVRQAYGEKVLKAYSASLGISVSELSRMRGFAKRFVSLEDMKTQHPDVKTWTQAKELLASARKNETQKVESPESNDQKKPTGNQPVSHAIRAIQAVRQCISKVQLAPAGDERTAFSEAVKGMLADIEKILGVRYTPENPFQAVTFSPLQDVIQHAPMTAVA
Ga0247533_101466	Ga0247533_1014661	F009606	IMSSAKNTGNNEAGRGANVVRTKAKPKVNPVTGGNFEYVSEPRIGDSYVVVVAGPGGVQSFTFHHPIGLTDVDSEDWVCTPTADIQSLLARKEDPDERDRKSKRDRYRLELAVQAKLLEKRDSDGLLVYPNSGTNRQDALAAARTAAKDAVKAEKGKPSPDLYIRFLEQNVQGPESKVRKFLADPETIKRAETKFPSSGYRTRSGPLADRDQVEVEYLIGLSRPQAMDATTKRIFGLGGDDE
Ga0247533_101477	Ga0247533_1014771	F074242	DMQRMSRNSQRPRGSRRGGRMRGLGGGGRSSLQPPPFVPTMSLSHRFRYVNGANTGAFSITRGNMLNQILVATSAVTTVRLLQAVRLKSVEVWANPSALGAAPTTIEFEWLGENAPSTLVSDTGMGVRPAHVYSSPPPSSSNRWWSISGSSESDVLFSLLLPADCVIDVMTELRFVETEGPTAGEIPAGAGLGVIYGDYLDGLASGKLAPIGYTVLP
Ga0247533_101497	Ga0247533_1014971	F024939	SRVAGPRTLRCAPVADYSSLDTWLSPLSADCSAFRFVHPMLPTDLTRRSTLDARRRSRIAPLPAICVRVAHRIAPCSTLRALHRSRIAPLSMLVRRASCELLRSPRFAPCRLSRISPPGLLRSDCSSFGDLMLRDGLRIAPYADTSHPCVDHGSLRVQHFKLRPVHRLLCARRLAFDSDRGLLRCLHLAPWCCPRIAPCATLGVLRLTRLPPHSTLIAPHQIWITPYPTLDTLLRLRIAPHSSLSAPC
Ga0247533_101498	Ga0247533_1014981	F031323	MVALTTSVSSDLKGDLTDTLAKDAVFSQINKIWERHRKQGLEDRHRTGVLLNEKFGAPGSRQAYGKKMLKAYSANLGISVSELSRMRGFATRFVSVKDMKTQHPHVKTWTQAKKLLVSTTKDEAQPADAPKGNDKTKPVEAKTVCHAIQAIQAVRQCISEVQLAPNGDDRTALDQAVKGMLADIEKFLGVRYLPENPFPAVIYSPLDDGIRHAPVALAS
Ga0247533_101501	Ga0247533_1015012	F018933	HLLHELPSPPLVFGRLNPVARLPLPEVSLVAKAPAGLISALFLRVAGLSLCCLRRSRITPRSTLDSLYRPRIAPRSVLIDRCCPPIARRSTLNAPRRSQIAPRSTLCARAGHGLLRVQHLESSPRVQIAPYSTLCVPRRSQIAPRSTLPAPYRLRIAPLSAIDAPCRSTDISVRLHFAPCAVHGLLRAQHVKLRTAHRLLCVRRLHFVPITDCSAFLTPCLVLLADCSVLNT
Ga0247533_101550	Ga0247533_1015501	F009606	STHDKSNNNAVGRGPNVIRTKAKPKVNPITGANFEFAHEPRLGDSYVIVVAGPGGVQSLTFHHPVGVTDVDGEDWVCTPTGDIPSLLARKDDPDELDRKAKRDKHRLDLAVASNLLEVDDDSGLIYPGTGIVRQAALAEARAKAKTAVKADKGAKVTPDLYIRFLPSEVQEKETALREFLAKEQTIRAAETKFPTSGFRTRAGPLADRDQESVGYLEGYSRAQAVDATVKRIYGIDDDDD
Ga0247533_101560	Ga0247533_1015601	F068527	WRLNLDDQVVQPAVASLGYPSGEPAAFAAAPSSGCADALLSACAYSPAPRLDRRPTSPARIGVFSPGSTGGKHPAFTVCYALPADWLPTSQLALVSSLQLGLRLLPTHIWRRPSARLARTTSGFRRLLLQLPACAFCRCNLQACARLLPPFAKPVVILRLASAVSPSGFTGFDSPGLRLALHTSGWAFDTPLTSTEPCIAG
Ga0247533_101618	Ga0247533_1016181	F003395	TASSEMLAAKRHAGVHTPVIAWKMIIANQQMAYAA
Ga0247533_101693	Ga0247533_1016931	F098181	RGSTVFSTGHPRQYSLAPAMLVCADRTRRGRFIAAELLVPRALRSRRSGIAPCSTLGFACFPRIAPCSAFSARRRSPILLGVQRLAPCASCGLLRTQRLAPVLVTDHSVPRIAPCSALETPPRIWIAPYTTLSLHASLLDYSTLAAFCSTSPHGSLRKLRLALCAGLRITPYANTCCPCSVHGLLRVPV
Ga0247533_101719	Ga0247533_1017191	F017080	DESVVQPVLRPLATPEAGLQLSLATSSSGCAGFEPPTCVGCSTSGSTGGQPSGSDRRSVLRLDRWQAPAFRRLHCASARPVANLPTCVGVLPPARPATNCRLTSGADPSARLVPNHRLSPAVVAAFSLRLLPLRLSSLRWLSPVCHTGGKLPTRIGCYAIQLYRF
Ga0247533_101744	Ga0247533_1017441	F093895	PELLVPTFSTSHRSGIAPCSTLAFCAIHGVLRGLHRMPALLADFSAINPLALCPAHELLRARHLAFCVEPGLLRARRFSPCVEPGLLRVQPSRSVPSPDRSVLFPSRFASLTDCSVVDAWLLVSRPERSVLLTSTLSRSPIARCATLCASHRARITSCTTLDLPPWAQIAPRL
Ga0247533_101792	Ga0247533_1017921	F038944	MRSRSSHAAKSGVGEHRARESESAQHCAKGKSAWRAP
Ga0247533_101795	Ga0247533_1017951	F080064	METSSVDHRVICGRCEQSLPEMEQSMTGRESQAMSAEQSVGKAGREVEGAEQSELGAEGQVSGTK
Ga0247533_101893	Ga0247533_1018931	F006591	HTLFPMRRSLGAPPSQVGGRLLDASSRGNAELSVSWQDRRPDCSKRLLGEAFQHDSQVPCRGTVPYKVMRLLRRNLVTAVLEVGPRELPPERWPKGTGLASYPSIDI
Ga0247533_101937	Ga0247533_1019371	F067292	DESVVQPLLRPLATPAADPQLALATASTGCAGFKPPTCVGCSTSGSTGGQPSGSDRCSVLRLDRWQAPGFHRLLCASVRPGADLPACAGVHPPARPATNCRLTPGADSSARLVPNFRLSPVVVAAFGLRLLLLRLLQLALGVARLPYRRRTSDSHRLLRRPASPVSTHSTCVGCFYFRLGLRCTPCFDWTLHRRTSRR
Ga0247533_102090	Ga0247533_1020901	F027759	NEATAESQMEAVRFTDNPGRPGKSKIRLVDQAPQNRGASRDEAKFTSSSGGVRTPSNANEELGSEKR
Ga0247533_102209	Ga0247533_1022091	F018868	MRSKTSLAAKSGVGEHTARESEAPNVCDGKECVASTH
Ga0247533_102225	Ga0247533_1022251	F045560	DEVGRKKDDETSGIIPGDWGKVRPGWLAGPLLSEAARQSGGGRIHQFLWQRSRAVSKREKGTER
Ga0247533_102300	Ga0247533_1023001	F004473	MKPVERFDPEGWKQPEGEWRSDDIATAPEIGADDGLKVKNSPGFGFETELSGGAFDRTGSQRITGVETKEQGGSVDLVMVAKASLRASERPFRVSGSGRMHVY
Ga0247533_102303	Ga0247533_1023031	F105213	RVLRTPPEELKTAFLTVVKEPGKARSVTKARACLKIVLDLVSKICSEPLAKGIRSSQSGMTASNHGWNFFNSLTTGEERDETFRLLSREEVQFEGYVERHDVFEDLYVSSTDYKEATDKLEHHIAASLGRAWMSKCGIPALLQGIVMETCYKPRKVYFKATGLLIDLGYPAPDMGENIHWVILRRGVLMGDPLTKPVLHLVNVCNRHLQKRILDPDFYSRLENSSEISESLREFSKLLNG
Ga0247533_102636	Ga0247533_1026361	F071421	GHSWRSRVGYKEGAPPKGTQPGTAPGTQGSTEAAQQAIQLPPLSFPRDGPPRFHSGLTATMVCDMRLSGGGNLSPITPKGGYRFGPTPMNLARVVAIGQPPTDPIAACWENQQDFS
Ga0247533_102637	Ga0247533_1026371	F061214	AQCRLVNGFAKLTNINLALKETPINGGLTDEGPKVAEYPGR
Ga0247533_102798	Ga0247533_1027981	F005081	MADCTILTITSDEPFLKLLRKELHDQVGVMHPMIVATTIDEACSLLPMAHPRLIVVHWNRHGGRSEELNRLLWATTVLARGVPVLVIADRYRVDQATTFYRMGVAEYISRTHHADQFGRILDTYLHHQPAASPAVAASLDDQIHSVKAWSAPTSPLKVHV
Ga0247533_102906	Ga0247533_1029061	F014264	TMIRRANVIRDYFGRGGERGKIGRLVRVSFSVWKKAEHYNPEGSRGPDGE
Ga0247533_102944	Ga0247533_1029441	F009043	SDLISQPNSPPACTALSFAIRVARCCPFRSPPPSFESSGSMRPGSPAGFPAWNRYLEAAFHSPKTTVRLRTAISRSKFPTYSFDTLPNVHPARSVSDSPTRSGSPRYAQDPHQKPVARLPSGSPNRSSDLHSPLGPFGPFRIKAFNPIPGQEAHLPNSFDCLSLPGSDSILLVPMPDHCSRLASCSAARWASAVMGFWA
Ga0247533_102947	Ga0247533_1029471	F024793	VNFASPELTLRFQRSRINQPDPAFPRSPGIIEKLDN
Ga0247533_102996	Ga0247533_1029961	F092084	SRPLKVKTVIIPKGQNEYGRDVVRFTADYAASDLFEQCIGCYPLVQHDLKDSFLNEESPSPPLMIDPDVMTDEEVERWMAKYVRGNTNAFVQNAGQNVPGGRN
Ga0247533_103174	Ga0247533_1031741	F030627	DPSFADKIILWREGSFPFKATGPRSESRLRGVGRYAVSDRFCGDLLPARARLGPLSVRHFLRIASGRRFCCGSFRRSNHPTGWHGGFPAGRPWDFAAERRKIAPTDKGWRSLPALPFPGPAPRIGLASSAVTGSIDLPWVQCTGVEGLSPRDPGTSLAATLTPIAHPAFWRRLVRGGLVAGRRLPPCPRLIASHGLL
Ga0247533_103250	Ga0247533_1032501	F034200	VASGQRTVKNGGRPGANGKDADTQSQTCVYLVREPASANASRSE
Ga0247533_103345	Ga0247533_1033451	F017082	AVLKIVNQGCVDGGKRINKKDTVAKDDALYSCDETVNGGSKLVQVGCVKDGKQYKAGDSFEVGKQWFNCTRTGREKVVAKAAGCVNNGKHLNDGDRFNENDVNYECTVDGDKVDVRATGCVQNDGGNVVERRLGCTWVEGTAPFQYEWTCKRDETANSAKKVQVRCNYNVGGGVYNIDPGCYRTVDKAAFGCVQQGDKLNLQSFQGDNAEQ
Ga0247533_103551	Ga0247533_1035511	F040634	MHGTELRISDCRAYSPQAPRLLAYPASASSPLDAPQLIFPKRDRSLVAAFPSPRTPSACADSTLRSMVLACHFAHLLAVRPARSTFRLPRQGLVGPSFRRHPRLKPVAFCAGPLCRLCRQIPLPFRSFRSLRIKALPGFATVRSAFRNCPIFVRSPQPFLLKFGFSQSFTYIGLLTNVSGQRRPVVSVMPLGSK
Ga0247533_103619	Ga0247533_1036191	F050386	GPRKSYLWKRISEVHKLMVDIQTAHAKLGSQDGNSREHRSRSQMIIK
Ga0247533_103728	Ga0247533_1037281	F102319	MIPGPITSWSKSLLRYKTKPMVMDAAAADKMNLTKEEKDGPSRAMLRLILLSVLHV
Ga0247533_103846	Ga0247533_1038462	F038036	MKVKELKQALRMISNVLADPRCKPGYGDQLRRVKRELEAVMRSGRLDQGRLFRAVEIVATVLKEIVENDAGQRP
Ga0247533_103872	Ga0247533_1038721	F060406	LGELNSTTGCRVLRLPQRPTSRFRLRSRPLAALAPNLRLASPASHSSSTGGRLRRLGSTFCRSARTVANLRLSPALRASVRPLADLPTFVGVLPQARPRTNFRFAPDFDPSTRLASNFRFAPVVVATSACAFCCCGLWLAPVPPVCQTGGEPPTRIGCPSSGFTGFDSLGLRLVLLPPAGLLMHP
Ga0247533_104180	Ga0247533_1041801	F079408	MPVRPFGSASGIGLPQLPKFPRLRPVAFTTGELIRLPSPSPLPFRNFRSLGIKAFNGRSRRPVRLPNSPDIRSLPVAFLFLVYGYGSSSAVRYVSGGLLFLK
Ga0247533_104217	Ga0247533_1042171	F040634	MHGTEHRISDCRAYSPQAPRLLVYPASASSLLDAPQLIFPKRDRLLVAAFPSPRTTPACADSALRSMVPAFYFAHSLAVRPARSAFWLPRHGLVSPSFRRHPRLKPVAFCTGPLCQLCRQVPLPFRSFRSLRIKALHGLATVRSAFRNCPIFVRSPQPFLLKFGCGS
Ga0247533_104529	Ga0247533_1045291	F001380	PGFTVRFSDPSACGRSLCNKMLRINSSSLSATAFQHATGHSNQHIFVGLSTLPEPESRYGLSLAHNDAFATIARSMFLACTFVSTSKTFANPFDSRLFRSVRFRGRTGAMSTPGTRFPLPPSTLRILPRSPLPFRPSFENPLDQSVRPVPNPEARLTRHPIVPCSPLLPLAIRLRISARNSLRLSLTIV
Ga0247533_104540	Ga0247533_1045401	F009043	ISQPNSPPACTALSLATRTAGCCPFGSPPPSFKSDGSMPPGSPASFPGWSRRLEAAFHSPKTTVRLRTAISRSKFPTYFFDTLPSAHQARSVSDSPARSGSPRHARDRYQKPVARLPFSSPNRSSDLHSPLGPFGPFRIKAFNPIPGQEAHLPNTPDHLSLPDFGSILLVPKPDHCSRLASRSAACCST
Ga0247533_104734	Ga0247533_1047341	F016923	MLWCASALLRSGRSSVLDTAFRSPAATADLSIRLRSRVNAPGLYLRTGSKIYARPVRLRTPASVVAFLSPSGARSSHVARCQVRNQNSLSVLKPPLLSRTSRSLGLVALDLIPTRETYPCELPDLPSLPAVPEIISYSPAPRIIVPDPLLPARL
Ga0247533_105001	Ga0247533_1050011	F038036	MKVKELKLALGMISKVLADPRCRPGYGDQLRKARRELEIVTRSGKLEQGRLFRAVEIVATVL
Ga0247533_105056	Ga0247533_1050561	F003383	VASLGCPVPAPFLLSRRPNPQVAPWFRAFGRAGGGRSSCPERRMPLALPVSASFRVTPENLAFSCPACDEGLGSPLVLHLRLYRRWTIESPRCSHHSAVPTYQSPGFPKSQPFGIADDSLSESPRTLNPPAPIDGYPSYLGSRTIRFALVRSPSCPGHLPSATAIDQFPGCPKSWVSHRS
Ga0247533_105089	Ga0247533_1050891	F059538	RLQLSLPLLPLAAPVSNLRLASAALPPARPRANLPARIGVVSLGSVSGKCSAFAAYYALPIDWLLTFQLALVSGLQLGLRLLPTHIWCCPSARLALQLPVLTGCCCNN
Ga0247533_105191	Ga0247533_1051912	F102319	MIPGPITSWSKSLLRYKSYPMVMDDVAADKTSPTKEKKDGPSRAMLRSIL
Ga0247533_105200	Ga0247533_1052001	F001380	TACGRSLCNKMLRLNSSSLSAAAFQHAAGHSNQQIFVGLSTLPEPESRYGLSLAHNDAFATIARSMFLACTFVSTSKSFANPFDSRLFRSVQFRGRTGATSMPGTRFPLHPSILRIHPQSPLPFRPSFENPSDQSVRPVQNPEARLTRRPIASYSPPLPLAIPLRISARNSLRLSLTYRS
Ga0247533_105292	Ga0247533_1052921	F020912	VTQRVKVATVHQHGAGGSGGLGNKAGPKKDAERRDKLSIRFGKDTEPWQSR
Ga0247533_105302	Ga0247533_1053021	F008172	VAPGQRTAKSGGRPGAQRQRRGYAITNVCLPGLPAGDRNRQPKRAKRPHSKFSDRKALDGPAMRPKTPLAVENGVGKLAAKARQMPARERECGELPSP
Ga0247533_105303	Ga0247533_1053031	F003497	HGSQRIGDVALLLPVTAFIRLRISAPEPIRHFYLLEAFVSERPFARPQRLFSFENHRSEVKAPDLSLRQNSELFFQPVRPFAPTLDGVHHASGDVRCTRPVAVSRAQNSQTSIQPSLPFRTFVPPDRSAQSAAWSEKLTLAPGPFFLRSPKASITF
Ga0247533_105667	Ga0247533_1056671	F085182	GAMIAGALRCVLEERGTAPKAHVEGHAAEESPDSKGRDGG
Ga0247533_106301	Ga0247533_1063012	F044105	VYQALSYAQLKNYAEAKKAIANLKSVPNIGPRVLKVWELYGATLGMPAAS
Ga0247533_106493	Ga0247533_1064932	F020912	ATVDQHDAGDSGGLGDKAGPKKDAERRDKVSIRIGKETQPGQGL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300023675: Metatranscriptome of spruce litter microbial communities from Bohemian Forest, Czech Republic - CLI5 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences