NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300024039

3300024039: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-277



Overview

Basic Information
IMG/M Taxon OID3300024039 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0132900 | Gp0272146 | Ga0233343
Sample NameLeaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-277
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size67504605
Sequencing Scaffolds20
Novel Protein Genes20
Associated Families4

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available19
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Rutstroemiaceae → Rutstroemia → unclassified Rutstroemia → Rutstroemia sp. NJR-2017a WRK41

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil And Plant Litter Microbial Communities From Temperate Forests In California, United States
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biome → litter layer → plant litter
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: California
CoordinatesLat. (o)40.2198Long. (o)-122.9842Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015054Metagenome257Y
F044253Metagenome154Y
F091248Metagenome107N
F106076Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0233343_1004422Not Available1175Open in IMG/M
Ga0233343_1004428All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Rutstroemiaceae → Rutstroemia → unclassified Rutstroemia → Rutstroemia sp. NJR-2017a WRK41174Open in IMG/M
Ga0233343_1004822Not Available1128Open in IMG/M
Ga0233343_1004867Not Available1123Open in IMG/M
Ga0233343_1004976Not Available1111Open in IMG/M
Ga0233343_1005675Not Available1046Open in IMG/M
Ga0233343_1006968Not Available947Open in IMG/M
Ga0233343_1007449Not Available913Open in IMG/M
Ga0233343_1009318Not Available817Open in IMG/M
Ga0233343_1009537Not Available808Open in IMG/M
Ga0233343_1010681Not Available762Open in IMG/M
Ga0233343_1011095Not Available748Open in IMG/M
Ga0233343_1011108Not Available747Open in IMG/M
Ga0233343_1011336Not Available740Open in IMG/M
Ga0233343_1012681Not Available699Open in IMG/M
Ga0233343_1013563Not Available676Open in IMG/M
Ga0233343_1015796Not Available624Open in IMG/M
Ga0233343_1017313Not Available596Open in IMG/M
Ga0233343_1018196Not Available581Open in IMG/M
Ga0233343_1024253Not Available502Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0233343_1004422Ga0233343_10044221F015054FISWKSSVLILGENDLLKLVNEKVLEQDVEEDKSHWRKSDARTRRSLVNTVRDHMGPQILQTKTTMKMFKILKE
Ga0233343_1004428Ga0233343_10044281F106076LLFPCIKEWXAYVTVTPDDSKITVFSKGNSKGFTASIPIGGHXAPNSTVGDRALXKKAQKILKKNNASDIINRATPMFNPLCTASVXFPKYVPSLITSLHHNDIDEIRATKANAKKFSALEKPCIVNTPHVVKVNKLKDENIGQGEGDTKWKGXPXKLLLVKIVMFILLLL
Ga0233343_1004822Ga0233343_10048221F015054MIGMKVEDHLDGATKFISWKSRVLLILEENDLLKLVNEKVPEPEAKEDKSHRRSDARARRIMVDSVRDHLVPQISQKKTSRKMFKTLKE
Ga0233343_1004867Ga0233343_10048672F015054MKVEDHLDGATNFISWKSRVLILEENDLLKLVNEKVPEPDAEEDKSHWRKSDCRARRILVDSVSDHLVPQISQKKTTRMILKP
Ga0233343_1004976Ga0233343_10049762F091248MSKRQKKKAPVVEEQTALDADTPIEYTYEDTQCVTGVDPEYKWGDIHRMISRREVPDTGLEEEHIYTNIEKSAIMKVATRPEMFPCAELMRWILPHTNHGSMLICNVGGQGYASFSPGYVSLAYHLPEPQVFLTNEWLDSLRMNLIDTMRKMLLPGKLFRHRVTEDYDTATLRPPYRFIALMLNRIFGRADGKLFKFEWIPLMFYV
Ga0233343_1005675Ga0233343_10056751F091248MIHLRKDILLHNVHKFKLLKCHNVFTLQEEFTMSKRQKRKAPAVEEQTAIEVVPQKEYIYEDTQCISGIEPEYKWGEIYRLISRREVPDTGLEEEPIYANIEKSAIMKVATRPELFPCSDVMRWILPHTNNNTMLMGNVEGQGYAAFSPGYVALAYHLPEPQVFLSNDWLDNLRMDLVETLRRMLLPGKLYRHRATEDYDTASLRAPYRFIALML
Ga0233343_1006968Ga0233343_10069681F091248MSRRQKKKAPVVEEQTAIEADLPTEYIYEDTQCVTGVDPEYKWGDIHRMISRREVPDMGLEEEHIYANIEKSAIMKVATRPEMFPCAELMRWILPHTNHGSMLICNVEGQGYASFSPGYVALAYHLPEPQVFLSNEWLDNLRMDLIETMRKMLLPGKLYRHRATEDYDTATLRPPYRFIALMLNRIFGRANGRLFKFEWIPLIFYVATEGTIFNWSSLVSSSLSSCIAAAKGGVEQKKSE
Ga0233343_1007449Ga0233343_10074492F015054LDENDLLKLVNEKVPEAGAEEDKSHWKRSYARARRILVDSVRDHLVPQISQKKTTKKMFKTLK
Ga0233343_1009318Ga0233343_10093181F091248VVEEVPEAEAETKTEYIYEDTQCVSGVEPEYKWGEIYRLISRREVPDTGLEEESIYANIEKSSIMKVATRPELFPCSEVIGWILPHVNTTTMIIGNAEGQGYAAFSPGYVALAYHLPEPQVFLSDDWLDSIRMDLVETLKKMLLQGKLYRYRQTGEYDTASLRDPYRFIAL
Ga0233343_1009537Ga0233343_10095371F091248MSKRQKKKAPVVEEVPQAEAETKTEYIYGDTQCVSGVEPEYQWGDVYRLITRREVPDMGLEEEPIYANIERSALMKVATRPELFPCPEVIGWILPRADVSTMILKDVNDQGYAAYSPGYVALAYHLPEPEVFVSDDWLSNIKMDLIETMKRMMLTGKLFRPRATNEYDTASLRAPYRFIALMLNIIFGRAHG
Ga0233343_1010681Ga0233343_10106811F015054KVEDHLDXATNFISWKSRVLILEENDLLKLVNEKVLEPDVEEDKSHWRKSDAKARRILVDSVRDHLVLPILQKKTTSKMFKTLKEX
Ga0233343_1011095Ga0233343_10110951F091248MSKRQKKKAPMVEEQSAIEVVTQTEYIYEDTQCVSGVEPEYKWDEIYRLISHREVPDMGLEEEPIYANIEKSAIMKVATRPELFPCSDVMRWILPHTNNNTMLIGNVEGQGYAAFSPGYVALAYHLPEPQIFLSNDWLDNLRMDLVETLKRMLLPGKLYRHRATEDYDTASLRAPYRFVALMLNRIFGRASGRLFKFEWVPIMFHVATQGTIFNWASLVSNSLSSC
Ga0233343_1011108Ga0233343_10111081F015054MIGMKVEDHLDGATNFISWKFRVLILGENDPLKLVNEKVQEQNVEEDKSHWRKSDARARRILVNSVRDHLVTQILQTKTTMKMFKTLKER
Ga0233343_1011336Ga0233343_10113361F015054MIGMRVEDHLDGATNFISWKSGVLILGENDRLKLVNEKVPEQDVEEDKSHWRKNDARARRILINPLRDHSVPQILQTKTTMKMFKTLKE
Ga0233343_1012681Ga0233343_10126811F015054MIRLKLEDHLDRAKNFISXKSKVLILEEKDLLKLVNEKVXEPDVEKDKSHXKKSDSRVRRILVDIVRDHLVSHILQKKTTRKMFKTLTKXXLLMAKPD
Ga0233343_1013563Ga0233343_10135632F044253VQRQIILLQYIPTEEQDADILTKALSKGKFEFHRDRIGVHDNPFLAEREC
Ga0233343_1015796Ga0233343_10157962F015054MIGMKVEDHLDGATNFISWKYRVLILGENDLLKFVNEKVREQDVEEDKSHWRKSDARARRILVNSVRGHLVPQILQTKTTMKMFKTIKE
Ga0233343_1017313Ga0233343_10173131F091248EHIYTNIEKSAIMKVATRPEMFPCAELMRWILPHTNHGSMLICNVGGQGYASFSPGYVSLAYHLPEPQVFLSNEWLDSLRMDLIDTMRKMLLPGKLFRHRVTEDYDTATLRPPYRFIALMLNRIFGRANGKLFKFEWIPLMFYVATEGTIFNWSGLVSSSLSSCIAAAKGGVQQRKSEFYMSSILIDCIMCHQPFPGL
Ga0233343_1018196Ga0233343_10181962F015054LGENDLLKLVNEKFPEQVVEEDKSYWRKSDARARRILVNLVREDHLVPQILQTETTMKMFKTLKE
Ga0233343_1024253Ga0233343_10242531F015054IFWKSIVLILEENDLLKLVNEKVPEPNVEEDKSRWRKSDARARRILVDSVRDHLVPQISQKKTTRKMFKALKG
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