NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300024991

3300024991: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_500_plan (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300024991 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118793 | Gp0095082 | Ga0209960
Sample NameWastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_500_plan (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size412698899
Sequencing Scaffolds14
Novel Protein Genes17
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta2
Not Available8
All Organisms → cellular organisms → Eukaryota → Opisthokonta1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Hordeinae → Hordeum → Hordeum vulgare → Hordeum vulgare subsp. vulgare1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameWastewater Bioreactor Microbial Communities From Cape Town, South Africa
TypeEngineered
TaxonomyEngineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationSouth Africa: Cape Town
CoordinatesLat. (o)-33.927Long. (o)18.452665Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001866Metagenome624Y
F007322Metagenome353Y
F017165Metagenome242Y
F026045Metagenome199Y
F055010Metagenome / Metatranscriptome139N
F075082Metagenome / Metatranscriptome119Y
F081545Metagenome114Y
F092364Metagenome107Y
F094111Metagenome106Y
F095751Metagenome105Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0209960_1000824All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea53775Open in IMG/M
Ga0209960_1017472All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta2995Open in IMG/M
Ga0209960_1017714All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea2948Open in IMG/M
Ga0209960_1040494Not Available1235Open in IMG/M
Ga0209960_1041776All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta1199Open in IMG/M
Ga0209960_1071517Not Available756Open in IMG/M
Ga0209960_1072145Not Available751Open in IMG/M
Ga0209960_1078103Not Available704Open in IMG/M
Ga0209960_1079326Not Available695Open in IMG/M
Ga0209960_1088732Not Available637Open in IMG/M
Ga0209960_1090511Not Available627Open in IMG/M
Ga0209960_1094296All Organisms → cellular organisms → Eukaryota → Opisthokonta608Open in IMG/M
Ga0209960_1114492All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Hordeinae → Hordeum → Hordeum vulgare → Hordeum vulgare subsp. vulgare523Open in IMG/M
Ga0209960_1116257Not Available517Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0209960_1000824Ga0209960_100082478F055010MQTNIPIQTVLIHKIRSISKPIIRLAKETGCAPEILLTYHTILSKRPQLEQRKKRKKKFQHKIQSVFLVLADTFAILIVACYFGEYSFLLVAPDKDTQSPWPIIRGEHPATIFYDNKASVAYNIELDYVQLFHRPLTDFLTAICTLFATYTVFEITYGKLEMTLSFIDCLLRDNVHSSTRSPQVLELINELNSMKNM
Ga0209960_1013078Ga0209960_10130784F095751MRFKPNILTEIQKIVAQNFQPPSVDDHHPYVAVYVRRSDKVQSKEMSQAYTLKQYFDLFDSDARRANISTVYLNSEDARVSNEFIEINKEKQGYYKLLTIKTTKDMVYGKLTQMSREQREKITIEFLTDLYIEANADLHSGTLTSNWCRLVDEIRLVLGKMLPFYTPENKYWMDY
Ga0209960_1017472Ga0209960_10174721F092364VRGSFTLRVTGPHNLTLNRINKKHSSCVVGDQCSLFTKGIGLTINDILRNKIQSNISFRKQSVLVQTAAGLTMIMFVIGFINGIFSLITFQNKELRKVGCGIYLLASSITSLLTITMFTIKFWFVILIQLHSIVRSSILRTDCAFIGPILKLCLYLDGWLNACVAIERTVNVSKGVNFDKKKSQRAARWILLILPIFIMGTLIQEPIHHELFEYTTQKYTPINMNNNLTMNMTMENDTNVGYENEYNVLCVIRYSRSVQTYNTITLFIHLVAPFFVNLFSALFIIFGTARRRATAKTNKKSFKEHAVNQIREHKQLLISPFILLVLALPRLIMSLISGCVDPSENPWLYLCGYFISFTPPMLVFTVFVLPSELYRKTFKDSMTRCRQQTDQ
Ga0209960_1017714Ga0209960_10177141F081545MNMDHQQLRSIIIKLETRLSDDDRERLHFYLGNDVTRKIRDDASLRDTLRLMDSIFDQDKINEQDFTFLIRAFEQIQCRDAVNLLKG
Ga0209960_1040494Ga0209960_10404943F017165IGANQWLADTFAWRVDRHRYAPSSIKQAISTMTMIRSLVDESALSMIPNELLFEIFSFL
Ga0209960_1041776Ga0209960_10417761F094111LTLSYNQPRFCLNTIWNSIATSFADQSFLGTDPHGIFVNSNNSIYIPNRQTGQIYIWQNENHLNPTKTIIYVDNGQYNGRVDKWIVENETWISVMNATSPCFGLFIDIYENLYCSMFYNHRVDKKWSNSIISIESTKW
Ga0209960_1071517Ga0209960_10715172F007322MIVIDRSARWLIELTWLAAFLAELGHERAIIAREYLHSMIVAIGDEQETSMMVERQAHRAVEQAISIAFSLGADRELDSSIIIKSIVSHLSSNLSLSLTTTKRCSKLQPAQTNEMKI
Ga0209960_1072145Ga0209960_10721451F026045MEIWTPNELGVGKPLIGSNHMHSIACREGDETLVLVECNRVWSLDDTIEGRDVMAFVSECLQSIVVGVGDDDSTLIIDAQSLRVAELTWLIAERAELEQERAIDQRQYLHSIVIGISDDDSMSIMIDRNSRWILELDRLRSSLADREQEREIDRRQEHQSMVVEVDDDDAMMMLVDRNALRIVELEIS
Ga0209960_1078103Ga0209960_10781031F001866MAFVSERLQSMIEVVGDDDSALIGDAHSLRIVELAWLIASRAEHEQERAIDRRQYLHSMIAGITDDDSMSIIIDRNACWTMELARLRSLVAADLEQEREIDRRQEHQSIVVVIGDDDATMMLVDRNALRAVELEVS
Ga0209960_1079326Ga0209960_10793261F017165FDCGSEKPLAVAFDEHRGLIAFSAGNRVHVIGANQWLADTFTWRPDRHRYAPSWIKQAVLTMTMIRSVIDECSAMSMIPNELLFEIFSFL
Ga0209960_1088732Ga0209960_10887321F001866VAIGNDDSALVVDAQSMRILELAWSIAFGAELEQERAIDRRQYLHSMIVGITDDDSMSIIIDRNACWKFELARSRSLLADGEQEREIDRRQEHQSIVVGIGDDDAMMMLVDCN
Ga0209960_1090511Ga0209960_10905111F001866MIEVVSDDDSALIGDAHSMRIAELAWLIAFGAELEQERAIDRRQYLHSLIPSIRDDDSMSIIIDRNACWTIELAWLRSSLADGEQEREIDQRQEHQSMVVRIDDDDATMMLVDRNASRILELEI
Ga0209960_1094296Ga0209960_10942961F001866MAFVSERLQSIVAGVGDDDSALNIDAHSMRIVEVAWLIAFGAELEQERAIDQRQYLHSMIVGITDDDSMSIIVDRNACWRMELARSRSMLADREQEREIDRRQEHQSIVVVIGDDDATMM
Ga0209960_1108901Ga0209960_11089011F075082IIQNFHLVWLDGNINENDDDCRNSIQKLKQVVNTVNTFVDFDECIDFINKIPEETAFMITSGALGQTTVPAIHNKKQVSVIYIFCGNKDRHEKWAKEWPKVKGVFTDIKPICEALKQAAQDCDQNAVSISFAPTGDSTANKNTLECSFMYTQILKDILLTIHFDHEHINEFLNYCRIEFA
Ga0209960_1114492Ga0209960_11144921F017165HISSFDCAIEKPWAVALDEHRGLIAFTAGNRVHVIGANQWLADTFTWRPDRHRHAPSWMKQAVSTMTMIRSLVDECSAMSMIPNELLFEIFSFL
Ga0209960_1116257Ga0209960_11162571F007322AVINDEDAIMIVIDRKAPWKVEPAWLVAVLAELGHERAAIIIIAREYLRPMIHRIGDEQETSMVVEHQASRAEELAISMAVVLGADRELDSSITIKSIVSHLFLFNLSLSHNDKEMFQAPNCSNPKR
Ga0209960_1119903Ga0209960_11199031F001866MAFVSECLQSTVAKVGDDDSTLIVDAHSMRVLELAWLIAFGAELEQERAIDRRQYLHSMIERINDDDSLSIIIDRNAKRPVELARLGSFLTDREQEREIDRRQEHQSIVV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.