Sample 3300025087

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300025087

3300025087: Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection A1 (SPAdes)

Overview

Basic Information
IMG/M Taxon OID	3300025087 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053054 \| Gp0056901 \| Ga0208957
Sample Name	Groundwater microbial communities from Rifle, Colorado - Rifle Oxygen_injection A1 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	232972624
Sequencing Scaffolds	21
Novel Protein Genes	23
Associated Families	20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	15
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WS5 → candidate division WS5 bacterium	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Rifle, Colorado, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	Rifle, Colorado, United States
Coordinates	Lat. (^o)	39.53	Long. (^o)	-107.78	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004010	Metagenome / Metatranscriptome	457	Y
F008189	Metagenome / Metatranscriptome	337	Y
F029588	Metagenome / Metatranscriptome	188	Y
F033485	Metagenome / Metatranscriptome	177	Y
F037704	Metagenome / Metatranscriptome	167	Y
F039448	Metagenome / Metatranscriptome	163	Y
F039988	Metagenome	162	N
F042954	Metagenome / Metatranscriptome	157	Y
F043672	Metagenome / Metatranscriptome	156	Y
F046735	Metagenome / Metatranscriptome	151	Y
F056958	Metagenome / Metatranscriptome	137	Y
F060593	Metagenome / Metatranscriptome	132	Y
F071896	Metagenome / Metatranscriptome	121	N
F073445	Metagenome / Metatranscriptome	120	Y
F084915	Metagenome	111	Y
F087386	Metagenome / Metatranscriptome	110	Y
F095460	Metagenome / Metatranscriptome	105	Y
F098345	Metagenome	103	N
F100657	Metagenome / Metatranscriptome	102	Y
F105003	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0208957_1000798	Not Available	19950	Open in IMG/M
Ga0208957_1001804	Not Available	10252	Open in IMG/M
Ga0208957_1001841	All Organisms → cellular organisms → Bacteria	10125	Open in IMG/M
Ga0208957_1004020	Not Available	5455	Open in IMG/M
Ga0208957_1004690	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	4836	Open in IMG/M
Ga0208957_1011965	Not Available	2394	Open in IMG/M
Ga0208957_1019995	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WS5 → candidate division WS5 bacterium	1662	Open in IMG/M
Ga0208957_1020463	Not Available	1635	Open in IMG/M
Ga0208957_1022144	Not Available	1551	Open in IMG/M
Ga0208957_1025333	Not Available	1416	Open in IMG/M
Ga0208957_1025647	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1404	Open in IMG/M
Ga0208957_1026635	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1369	Open in IMG/M
Ga0208957_1034347	Not Available	1150	Open in IMG/M
Ga0208957_1036225	Not Available	1108	Open in IMG/M
Ga0208957_1044926	Not Available	957	Open in IMG/M
Ga0208957_1045765	Not Available	945	Open in IMG/M
Ga0208957_1054558	Not Available	839	Open in IMG/M
Ga0208957_1073479	Not Available	684	Open in IMG/M
Ga0208957_1076753	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
Ga0208957_1083805	Not Available	625	Open in IMG/M
Ga0208957_1096874	Not Available	561	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208957_1000798	Ga0208957_100079811	F056958	MEENILAEEKAKSIKLADGNEYTLPPIDMTTLANIEKTMGFSLGSLGKRFESETMTTIRALVYALLKENHPDLTLDGVGHLITLKEIGLLSTTLSEIMAMSS
Ga0208957_1001804	Ga0208957_100180421	F100657	MTQITISYTTSVSTPAGWRNETVTATVEVISPKRGRVLCVQDIGGNGNSGYGSRTGAKRQAYHVGGIAMREQGKIKNLSACW
Ga0208957_1001841	Ga0208957_10018415	F037704	MSSVREMVKAMQQEMLTGDLPPTRATELLIRLSALIGNTNEEIRGADSAYAAVLLRELEQNEKANRARIRAETTEEYARKREARDTKELVLELTRSLKYLIRSAQEEMRLAR
Ga0208957_1004020	Ga0208957_100402015	F105003	MTNETGQINYRKLLYFSDNKILVHFKDLDGIFYNGLIIDLSEKKLTLVLYERVRGTIPILLECIKTDSIQEFKKL
Ga0208957_1004020	Ga0208957_10040207	F008189	MDYQAELKRLNEGGNYWKPKVGQYKVKTLTELEEADPFVRKHEGAEDEFSPQAKIIILVNGEEKIWTFGKGKTPASTYGQLIDFATKNNNSLKDKEFTVVVKSDGTKNDYTIV
Ga0208957_1004690	Ga0208957_10046908	F037704	MSSVRERVKAAQKELRDGGDLLPTRAAQLLMELTALLGNCLEEIREADHAYAVVLLGALETSEKANRAKIWAETSVEYQRKREARDTRELVQELVASLKYYLRSLEAEMRLSH
Ga0208957_1011965	Ga0208957_10119653	F043672	MADLKTPEQLAVTMIGTSSFGSQTGGIGSIMGSTWSEKIIFDAQPDRVLSKYFLEFTDLMGNNDVTIVIPKIGDVNLMGGRGTGATINKEGQTRVMTLFDTADNLTVSLTSADVKLGGCAVSFETASATRVSIVEMAHKQLVRQYLNTLETDANALLEGATINATTGASSVFGGSSVADESAITSNLSAGDVIDVDKIVDMKIHLMRKNFGKNPGDAVLFLHPVQFKQLLKSSQFTNAAEFGGPSVVRQGVIEEYIGCKIEKSTLVTSATQGVALHYAYMIDPSAAAGIVWKEKAKVKVVTWDDERVHKILLDAWYKMTRINNCAIVLGVFADA
Ga0208957_1019995	Ga0208957_10199954	F004010	MPLGKNVSANVKELYKDNQRSGKARGANGKPRSRAQIIAISFHAAGKGRKRKISTDGGYLKS
Ga0208957_1020463	Ga0208957_10204632	F060593	MIYPRLPDDQYKKYLFQARSQIGAILNIFRCYGLEPFVDGAIEECMKITENFAMVVRGKEKPIHILKEPKRRATE
Ga0208957_1022144	Ga0208957_10221442	F046735	LKLNVFERLLIRNIVPQIQGWNYAHMKEARELLEGLFTEQEETDLQFEQVETQVKWRVAQEDGTPIPQERDIPVSDGLKSKVGKFLKQLDKEEKLDFSHMTLYGKFVE
Ga0208957_1025333	Ga0208957_10253333	F098345	MQKPKNIKNLTHSASKLNILYLGKEIVYTGTGHSLRPYRGEIINIAYYSDLDPVPYAEIKLKLWNNRTVTKILPLSDIVLVSSDKVKKAKNKKSKLAA
Ga0208957_1025647	Ga0208957_10256474	F087386	MTKQELFEKYSINESHNVWDNQIDNWMSVEIYRIMHNGELPKPDDTTIKWVCDFLDKQADMKWWAVNVMSRNDWGSLYLTAKRMIYSFSDQILKELTEPKPNEK
Ga0208957_1026635	Ga0208957_10266353	F033485	MEIIIKGKHDHFGKTRSEQEKNMRKEWGCTMTDEQLDKLKFLEKKVKDKSGSKKNFITGIDIDKVK
Ga0208957_1034347	Ga0208957_10343472	F073445	MQLMNKKGQIFDGIASLATGIAVLAITMVVVFLIFSTTKANVDDPNATAALNTLGAAAATIPGWVPIVVVAVIGSLLLGLVALFRRG
Ga0208957_1036225	Ga0208957_10362253	F071896	SNSKIYWTQLNGRPINLMKIAAPASLPYVELENMAYTSDLIQTGDIYVPDKDVFDALGIISLKHEDIKLHSELKRMLANLEAEELKEEISKLPDGNKELLAELAIVDYDNLRGSVVNTIENETKVKISLIKEDEKANKQNQEKNK
Ga0208957_1044926	Ga0208957_10449263	F039988	GSIINLVGIKMKVIKARLENYADRKDGTVSLKLDSLLEVKDSDIAEIRGMRGNIAVAVITDVVDVLEAEINTKDIMDNLPDDPFLDTRITPSQQQRRDLFVIQEKKLGRKPTKEEQAKFYIERMSRIHEQNLEEIRELDNLSGGDYD
Ga0208957_1045765	Ga0208957_10457652	F029588	MTKYSFWIGLRKTLKNSLVLLGPFFLAVLAGLPVEFAWITGPIAYLLKNWIENK
Ga0208957_1049269	Ga0208957_10492691	F042954	MEDVQKRNNLYGFEFREHDKRRVEQGSRTHWNIKQLWQRNHEIINLAAKGFKNVDIAEILGITPACVSDTLNSDLGMAKLSELRQERDEDAKKTVEKIRLLTNKAIETYNQIFDDDSGEASIKLKKEVADNVLLELSGLKAPTKVQTQNVSMTLTADELEEFKKRGRQAVNEVI
Ga0208957_1054558	Ga0208957_10545582	F029588	MVKLPEYSYLTGLFKTAKNSLYLLAPFAIALLIGVPSEYAWITGPLVYFIKNYYETKTGKKL
Ga0208957_1073479	Ga0208957_10734792	F071896	THSKIYWIQLNSRPINLLRIGTPASLSYLELENMAYTSDLIQTGDVYVADKNVFEALQLQNVKYEDIKLSSELKKMLSLSSEELKEEMQKLPEGNKELLAELALANYSDLKGSVIDVIEEETNIKVTLVKEDEKANKENQKKNTK
Ga0208957_1076753	Ga0208957_10767531	F039448	MNVSKAIELAMAETIRKYAEMGEDVTIRAWQSLASDGSWLEHPDRVFPMIDVRCGPPRTDDNQSTLAVECSILMGTKTDDDKDHAFISAMYEAVQGVCDNMFSQFRTTAGSTYTADTELYDFLDRVVTEAGASAFEFGGLTFGDGLSPADDGGINMIGITMVIHFGRSDF
Ga0208957_1083805	Ga0208957_10838052	F095460	MNSIGDLIDKLIIENIKIFNLRENMHSKKLSDEHYVTMSNQMNLLNKNRSTISNFLDDKIDRVVAGKEQNTFLNIIKTYEGKK
Ga0208957_1096874	Ga0208957_10968742	F084915	MEELKEWLIKEINSINIDYYNESTYAWSKGYKKSLLETLDAIKRIESDKLNTK

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