NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025105

3300025105: Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Dewar Creek DC16 2012 metaG (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025105 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0111485 | Gp0115603 | Ga0209479
Sample NameHot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Dewar Creek DC16 2012 metaG (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size276844252
Sequencing Scaffolds3
Novel Protein Genes3
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameBacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationCanada: British Columbia
CoordinatesLat. (o)49.9543Long. (o)-116.5155Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028182Metagenome / Metatranscriptome192N
F059099Metagenome / Metatranscriptome134Y
F103293Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0209479_1002490All Organisms → cellular organisms → Bacteria12753Open in IMG/M
Ga0209479_1021819All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1481Open in IMG/M
Ga0209479_1072228All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon547Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0209479_1002490Ga0209479_10024903F028182MRYDTHVMPKVSISEAARRFDTTKEVICAWIRLELLDMEPPPAKPRRTRELNLAFQPTSAAPEPKVDLKQLYEVAEEVGWLLLSLEAWDRADTETACRLSHTGTIPPP
Ga0209479_1021819Ga0209479_10218194F103293LEPPYEIFEFKPCEWAAFHVTSFKIGKMQIAPRWPGAPAAKLVLAIRLFVKPETKPAYPYYWDITPSRLVNQLAAMLARGIPTGMYLRIHRDVAGPKAHFSVEWVSTV
Ga0209479_1072228Ga0209479_10722282F059099VLRLIDEARSRLRTAIWALHGMHQDMNALTADDLADVEHMLTELLDGALTPAYESLSQIVQTNPDGTVTTH
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