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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300025214 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053074 | Gp0053872 | Ga0208337 |
| Sample Name | Marine microbial communities from the Deep Atlantic Ocean - MP0371 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 66258099 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 5 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 3 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1 |
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon SCGC AC-337_F14 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | East of Porto Seguro, South Atlantic Ocean | |||||||
| Coordinates | Lat. (o) | -15.83 | Long. (o) | -33.41 | Alt. (m) | N/A | Depth (m) | 4003.17 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005094 | Metagenome | 412 | Y |
| F013190 | Metagenome / Metatranscriptome | 273 | Y |
| F033215 | Metagenome / Metatranscriptome | 178 | Y |
| F066126 | Metagenome | 127 | Y |
| F089570 | Metagenome | 109 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0208337_1001757 | Not Available | 2911 | Open in IMG/M |
| Ga0208337_1004402 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1657 | Open in IMG/M |
| Ga0208337_1007583 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon SCGC AC-337_F14 | 1199 | Open in IMG/M |
| Ga0208337_1015889 | Not Available | 745 | Open in IMG/M |
| Ga0208337_1027525 | Not Available | 529 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0208337_1001757 | Ga0208337_10017574 | F066126 | PKNFPKNKVNLGGINSVGIAIKNTRTIPVYKKRLNSNDLISNI |
| Ga0208337_1004402 | Ga0208337_10044023 | F089570 | MQNHCFRICLVFFFLLTLNIHPLLSDDQWPSLELNDKNKTKVDDALSSCENVEFEQLLHNKKTLLGINEPDRTLNKRNRLDNSLGIEVSRSIETIYTPKQSLENIKKILSLIKDERLYSAVAYYIIKDFAFYQSGICKSLQNHFNTYKVYKDFFLKTKNKQLDPIYENENNLQFFYRNTTNARKRLLLGIQSKKRLLEKEQLLLDNLKIFKKEYI |
| Ga0208337_1007583 | Ga0208337_10075834 | F013190 | SNAELGQEMSISATWDGSIPLNETPSTVASKVASSTKVDIAEIIAFHSLEVFVLAENSNLIK |
| Ga0208337_1015889 | Ga0208337_10158891 | F033215 | ASAVSERVVFVLVQVSATDKLPLRLRVVSEVLNEAPLANVAPIGRLRVPPVEERVPAVALIPPLRVKSALPVTIFSPAASRVTGCAMLNPAIALSSVKAKLAKSSVPTDREALSSIVEFAAKRRVVELSGSTPPKSCTPATSRMPPESVSACSFVVKVVFFVFRVAPESANALCRTSVVSGSERVEPEARLPPEFSVIVPPLELSFARLLIVKAPESVRLPASVSIETPFRLTEVVASVIFS |
| Ga0208337_1027525 | Ga0208337_10275251 | F005094 | MGRSVNSFSDWVGHTTEIDGDRVTLPEKDLWVAVLARAALDACKGPPRLDLTSRANVSHNNYYKYNREAARHFFLRGGAHFK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |