NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025350

3300025350: Archaeal communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter C (PS_C) MetaG (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025350 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0067861 | Gp0093347 | Ga0209778
Sample NameArchaeal communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter C (PS_C) MetaG (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size91208616
Sequencing Scaffolds15
Novel Protein Genes16
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria5
All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2
Not Available4
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSaline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → spring water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021443Metagenome / Metatranscriptome219Y
F023604Metagenome / Metatranscriptome209Y
F028182Metagenome / Metatranscriptome192N
F043237Metagenome / Metatranscriptome156Y
F068875Metagenome / Metatranscriptome124N
F075398Metagenome / Metatranscriptome119N
F075803Metagenome / Metatranscriptome118Y
F078762Metagenome / Metatranscriptome116Y
F081384Metagenome / Metatranscriptome114N
F096328Metagenome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0209778_100043All Organisms → cellular organisms → Bacteria129718Open in IMG/M
Ga0209778_100637All Organisms → cellular organisms → Bacteria23703Open in IMG/M
Ga0209778_101435All Organisms → cellular organisms → Bacteria11613Open in IMG/M
Ga0209778_101616All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae10111Open in IMG/M
Ga0209778_102073All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium7822Open in IMG/M
Ga0209778_104181Not Available3424Open in IMG/M
Ga0209778_105205All Organisms → Viruses → Predicted Viral2625Open in IMG/M
Ga0209778_105909All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus2222Open in IMG/M
Ga0209778_106655Not Available1938Open in IMG/M
Ga0209778_107230All Organisms → cellular organisms → Bacteria1754Open in IMG/M
Ga0209778_107970All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1559Open in IMG/M
Ga0209778_108835All Organisms → cellular organisms → Bacteria1373Open in IMG/M
Ga0209778_110418All Organisms → Viruses → Predicted Viral1125Open in IMG/M
Ga0209778_113917Not Available809Open in IMG/M
Ga0209778_117612Not Available619Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0209778_100043Ga0209778_10004347F028182MRYNTLVMPKVSISEAARRLDTTEEVIREWIRLGLLDVEPPPAKPRRTRELNLAFQPTSAVPEPKVDLEQLYEVAEREGWLLLSLEAWDAADSEP
Ga0209778_100637Ga0209778_1006378F075803MRFRTSASEVPNATLWPFLHNLHKPPLHKKLHFRRIPKKAFAIGGFDTTSPRMTLLRSLLEIFWNQGAALERRSTPSTPKGATFLFVYSYITPHGACRFWFAAHLRLHPVLESRVFIEPSLGEPHPYLICGSTLGTFPILNPEKEPTLPKCSFNSTPPEKNQKGYAYA
Ga0209778_101435Ga0209778_1014352F023604MAMDIPVSKAAVKSRALEKAALKGMRPSAGEEEEKPWQAYAKEKNLCPVKIDYISN
Ga0209778_101616Ga0209778_1016166F043237MELGRTARYIAQLSGRGYKYAVVGKLARYDKKLVKRLEYEGFVFYLCRFQTKKEVVEYCLERAEGTFRVYCLASKPLEFPNAPLKLHYDEKTKRLRLLAQRSFINECLKVVERASSLKYPNHKLYTAKLNEALRNLYQILAYTYNDRERLRAIKRKVKHLFVSALKENYGIEPKRAMLDYKNYVVKFSDFLKKKQRGPLNSSTSCPKKLKL
Ga0209778_102073Ga0209778_1020733F081384MLITPSDFGGDYRLFNANNLDPDTIQAIDQAQAELARDLFPVGHSFITGNLPSAPPNLGLRALGLHNLFVPWVFLRLELGILGAGVKRASDVPGRSRFASGAFFAIARQYRYFLDDWLPYEGYIEGIASSPTVLNIPIIASQILAPGMEIEINSERYSVVASSTGLLTIDPPLPLGTGNVRFRQLSLRVNRKWNYL
Ga0209778_104181Ga0209778_1041811F078762PAPFGRWPPHKKNVYNGKSYKGGIEQGNVLALYEVRGDSLFTKAFYMCSHHRYPLSQLNKKLPSTSDTAKAFNTNTATPPATTE
Ga0209778_105205Ga0209778_1052053F096328VREAAYFWSKEAEKILAPYVQALIGAKEPPTISSPLLASPWDYAFSDDLLVDLKLACKARSYGQISHSTLTDIRKSLESGVMVALFIPPRLYLLSPWDITWDGSLESLYICPSVSVPESVVQQVWSIYNRMTL
Ga0209778_105909Ga0209778_1059094F096328MKYTAYFWSKDAEVILAPFVQVLVGAEKPPTISSPLSAANWDYSFDDLLVDLKLACRAGIYGKISDQTLADIQASLRNGVMVALLVPPRLYLLFPYDLTWDGRLETLWNRPSVLVPKNVLEQVWDVYVKMTS
Ga0209778_106655Ga0209778_1066551F021443MRYLLNDEKLTFTFTSSYVECHNYVYGYYQINEILSFAVLDLVLKIINQQKRKSITLKKRKPIIHLLNYIDILNFNFNSNKFVIAFSLENEYKRPLIFNLCLYRRRYKDFYKDNLKVIELKNLCIIRFERDYATRIQPKNLNLATMLMHILEKERIDMIDGNGIIFYCVFLM
Ga0209778_106655Ga0209778_1066552F021443MKCMLKNEKLIFKFACPYPSYVTCYNDNYYQINEILSFAVIDLAFKIINQQKRKSIILKKRKPIIHLLNYIDILNFNSNKFEITFPLENKYKTLLTLNLFLYRSSHQERYYNDLYKNNLKVIERENLCIIELKYDYASRIQPKNVNLVTMLIHILEKKKIYMDLNGIIFYCVFLM
Ga0209778_107230Ga0209778_1072304F023604MRLHFLAPYLLSLTMAMDIPVPKAAVKSRALEKAALKGMRPLAGVREEKPRQAYANETNFCKVKIDYISN
Ga0209778_107970Ga0209778_1079701F068875LELSPANSTFPDIYRLITPRLDEVTSERPEAITEEIGATTYYVRDAARTITATVGQIPTEWAQRVAELRCQAEVGVFLIDANGTIWGRKVDTQTGVAGAPLPVVPSSVDVRFAFPSYTSVQKHIISFQLPFVLADYEIIPLWNNREVLNYLAPQPVGFRVFEDGGTWVVFLFSKYHSPEGTIVVPIANVVVPSEIEIYDSTGTTLVATGASNLGGGKYSLTSSLTSGTQYILDCTAVSSPPRSQFDWPAIRVPFRA
Ga0209778_108835Ga0209778_1088351F075398MLRRLESGRLTFGVSVGLLGMALMSLGYARVDKAPTFKTDPYPFVENLGQLADPEGRPLRDAYFSFEAPGMRGYVTRWG
Ga0209778_110418Ga0209778_1104182F096328MTEAAYFWSKEAEKILAPYVQHLVGAEEPPEISSPLFAMPWDYSFNGLRVDLKLACKARSYRRISHRTLTDIRKSLESGVMVALFIPPHLYLLYPWGAIWDGSLEFLYTCPSILIPESVVQKVCEIYNRMVL
Ga0209778_113917Ga0209778_1139171F043237MDLEKTARYIAQLSRHGYKYAIIGKLVRYDRELVKRLEYDGFVFYLCRLPSKKEVVSYCLPRTEGAFKVYCLSSKPLEFPNAPLKLHYDEKSQRLRLLAQKSFINNCLNAIEKASSLTYPSPKLYTGHVNKLLRQLYGILAYTYNDRERLSAIKRKVKHWVVEALKSQYGLKPKDAMLDYSRYVLKFSDVLRKKKSVFRNL
Ga0209778_117612Ga0209778_1176121F021443MKCLLNSGKLTLIFSDPYLIDYVTCCNYDYNYYQTNGILSFAIMDLVFKIVSQEKVKSIILKKRKPIIHLLNYIDILNFNSNSNKLDITFSLKNKYKVQLIYNLYLYRSSHRRRYYEDLYKNNLKVIERENLCIIELDDDYASRIQPKNVNLVTMLTHILENKEIDMIDGNGM
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