Sample 3300025523

Basic Information
IMG/M Taxon OID	3300025523 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0110114 \| Gp0088365 \| Ga0207807
Sample Name	High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-5-D (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300025523 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0110114 | Gp0088365 | Ga0207807

Sample Name

High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-5-D (SPAdes)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	176331619
Sequencing Scaffolds	43
Novel Protein Genes	52
Associated Families	3

Dataset Contents

Total Genome Size

176331619

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	42
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus → Quercus lobata	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus → Quercus lobata

Ecosystem Assignment (GOLD)
Name	Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
Type	Engineered
Taxonomy	Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Ecosystem Assignment (GOLD)

Name

Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Type

Engineered

Taxonomy

Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Joint BioEnergy Institute, California, USA
Coordinates	Lat. (^o)	38.5402	Long. (^o)	-121.75	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Joint BioEnergy Institute, California, USA

Coordinates

Lat. (^o)

38.5402

Long. (^o)

-121.75

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F010514	Metagenome	302	Y
F031319	Metagenome	182	Y
F038929	Metagenome / Metatranscriptome	164	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207807_1008562	Not Available	1764	Open in IMG/M
Ga0207807_1012970	Not Available	1439	Open in IMG/M
Ga0207807_1015938	Not Available	1297	Open in IMG/M
Ga0207807_1016003	Not Available	1295	Open in IMG/M
Ga0207807_1016050	Not Available	1293	Open in IMG/M
Ga0207807_1016227	Not Available	1286	Open in IMG/M
Ga0207807_1016387	Not Available	1280	Open in IMG/M
Ga0207807_1017738	Not Available	1230	Open in IMG/M
Ga0207807_1020802	Not Available	1135	Open in IMG/M
Ga0207807_1021262	Not Available	1122	Open in IMG/M
Ga0207807_1021454	Not Available	1117	Open in IMG/M
Ga0207807_1022057	Not Available	1101	Open in IMG/M
Ga0207807_1030772	Not Available	930	Open in IMG/M
Ga0207807_1031819	Not Available	914	Open in IMG/M
Ga0207807_1034092	Not Available	882	Open in IMG/M
Ga0207807_1040274	Not Available	808	Open in IMG/M
Ga0207807_1044175	Not Available	770	Open in IMG/M
Ga0207807_1047263	Not Available	743	Open in IMG/M
Ga0207807_1051042	Not Available	714	Open in IMG/M
Ga0207807_1051056	Not Available	714	Open in IMG/M
Ga0207807_1052985	Not Available	700	Open in IMG/M
Ga0207807_1058823	Not Available	662	Open in IMG/M
Ga0207807_1058841	Not Available	662	Open in IMG/M
Ga0207807_1059478	Not Available	658	Open in IMG/M
Ga0207807_1059648	Not Available	657	Open in IMG/M
Ga0207807_1063417	Not Available	636	Open in IMG/M
Ga0207807_1063811	Not Available	634	Open in IMG/M
Ga0207807_1064051	Not Available	633	Open in IMG/M
Ga0207807_1064376	Not Available	631	Open in IMG/M
Ga0207807_1067302	Not Available	616	Open in IMG/M
Ga0207807_1067780	Not Available	614	Open in IMG/M
Ga0207807_1069923	Not Available	603	Open in IMG/M
Ga0207807_1072969	Not Available	589	Open in IMG/M
Ga0207807_1073868	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Quercus → Quercus lobata	585	Open in IMG/M
Ga0207807_1077309	Not Available	571	Open in IMG/M
Ga0207807_1078771	Not Available	565	Open in IMG/M
Ga0207807_1079065	Not Available	564	Open in IMG/M
Ga0207807_1079806	Not Available	561	Open in IMG/M
Ga0207807_1084130	Not Available	545	Open in IMG/M
Ga0207807_1085531	Not Available	540	Open in IMG/M
Ga0207807_1085532	Not Available	540	Open in IMG/M
Ga0207807_1085533	Not Available	540	Open in IMG/M
Ga0207807_1095263	Not Available	509	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207807_1008562	Ga0207807_10085621	F010514	EISGKSENKIFLQNSVHTRPGPKNSEKNSKKIQKIVKPHPGIIFSQYGMR
Ga0207807_1012970	Ga0207807_10129701	F010514	AKRDEIGRKRENKILVPNSVHTRPGQENSDKNSKKIQKIIKPLPGIIFSQNGMR
Ga0207807_1015938	Ga0207807_10159381	F010514	KRVKKILVPNSVHTRPGKENSEKNSKKIQKIIKPLPSIIFSQNGMR
Ga0207807_1016003	Ga0207807_10160031	F010514	DEIGRKRENNILVPNSVHTRPGQENSEKYSKKIQKIIKPLPGIIFSQNGMR
Ga0207807_1016050	Ga0207807_10160501	F038929	LETKRVRIGRKIENKNNFLPIRLNPTRVRKFKNKCKKILKIKKHHPGFISRRNGSGQAEK
Ga0207807_1016227	Ga0207807_10162271	F010514	ILVPNSVHTRPGQENSEKNSKKIQKIIKPIPGIIFSQNGKI
Ga0207807_1016387	Ga0207807_10163872	F038929	MKRVRMGLKIERKKNFIPIRSNPTRVKKFKNKCKKILKIKKHHLGFISRRNGSGQAAK
Ga0207807_1017738	Ga0207807_10177382	F038929	MKRVRIGQKIEKKKNFILIRSNPIRVKKFKNKCKKILKIEKYHLGFISRRNGSGQATK
Ga0207807_1020174	Ga0207807_10201741	F038929	MKRVKTDRKTENKKYFFPLRSNPTRVRKFKNECKKVLKIKKHHPGFISGKNGSGQAEK
Ga0207807_1020802	Ga0207807_10208021	F010514	KILVPNSVHTRPGQENSEKNSKKIQKIIKPLPGNIFSQNGMREAEKVKSKF
Ga0207807_1021262	Ga0207807_10212621	F010514	PNSVHTRPRQENSEKNSKKIQKIIKPLPGIIFSQNGMRYAEKEKTKF
Ga0207807_1021454	Ga0207807_10214541	F038929	MKRVRIGQKIEKKKNFIPIRSNPTRVTKFKNKCKKILKIKKHH
Ga0207807_1022057	Ga0207807_10220571	F010514	RDEICRKRENKILVPNSVHTRPGQENSEKNSKKVQKIIKRLPGIIFRQNGMR
Ga0207807_1030772	Ga0207807_10307722	F038929	VKRVRTGRKIENKKNFIPIRLNPSRVTKLKNDGKKILKIKKHHPGFISRQNGSGQAKK
Ga0207807_1031819	Ga0207807_10318191	F010514	MEDIGRKSENKILVPNSVHTRPGQENSEKNSKKIQKIVKPIPGIIFSQNGKI
Ga0207807_1033873	Ga0207807_10338731	F038929	IENKKNLFPIRSNPTRVREFKNKCKKILKIKKHHPGFISRRKGSGQTEK
Ga0207807_1034092	Ga0207807_10340922	F010514	GRKSGNKILVPNSVHPRPGQENSEKNSKKIQKTIKPLPGIIFSQNGMR
Ga0207807_1034426	Ga0207807_10344261	F038929	DRPKIENKKNYIPIRSNPTRVRKFKNKCKKILKITKHHPGFISRQNRLGQAEK
Ga0207807_1036200	Ga0207807_10362001	F010514	LLQNSVHTRPWQENFEKNSKKIQKIIKPIPDIFSRHNGTR
Ga0207807_1040274	Ga0207807_10402741	F010514	KTLVPNSVHTRPGQENSEKNSKKIQKIIKPLPGNIFSQNGMR
Ga0207807_1044175	Ga0207807_10441751	F038929	RVRTGRKIEKKKNFIPIRLNPTRVKKFKNKCKKILKIKKHYPGFILRLNGLGQAKK
Ga0207807_1047263	Ga0207807_10472631	F010514	GRKSEMKNLVPNSVHTLPGQENSEKNNKKIQKILKPLLGIIFSQNGMR
Ga0207807_1051042	Ga0207807_10510422	F038929	MKKLVRTGRKIENNKNFIPIRTNPTPVRKFKNKCKKILKIKKHHPGLISRRNG
Ga0207807_1051056	Ga0207807_10510561	F010514	EHKILVPNSVHTRPGKENSEKNCKKIQKIIKPLPAIIFSQNGTR
Ga0207807_1052985	Ga0207807_10529851	F010514	IKILVPNSVQTRPGQENSEKNSKKTQKIIKPLPGIIFSHNGMR
Ga0207807_1058823	Ga0207807_10588231	F010514	RKRENKILVPNSVHTRPGQENSEKNSKKIQKIIKPLPGNIFSQNGMR
Ga0207807_1058841	Ga0207807_10588411	F010514	KRDEIGRKSENKILFPNSVHTRPGQENSENNRKKIQKIIKPIPGIISSPNGMR
Ga0207807_1059478	Ga0207807_10594781	F010514	RKTEIKILLQNSVHTRPGQENSEKNSKKIQKIIKPLPGIIFSQKGMR
Ga0207807_1059648	Ga0207807_10596481	F010514	VIGRKRENKILVPNSVHTRPGQENSEKNSKKIQKIIKPLPGIIFSQKGMRLADKVTTKF
Ga0207807_1063417	Ga0207807_10634171	F010514	DDIGRKRENKILVPNSVHSXPGQENSEKNSKKIQKIIKPLPDIIFSQNEMR
Ga0207807_1063811	Ga0207807_10638111	F010514	DEIGRKRENNILVPNSVHTRPGQENSEKYSKKIQKIIKPLPGNIFSQNGTR
Ga0207807_1064051	Ga0207807_10640511	F010514	MGRKKESKILVPNSVHTRPEQENSEKKSKKMQKIIKPLPGIIFSQNGTR
Ga0207807_1064051	Ga0207807_10640512	F010514	RENKILVPNSVHTRPGQENSEKNSKKMQKVIKPLPGIIFTQNGTR
Ga0207807_1064376	Ga0207807_10643761	F010514	ENKILVPNSVHTRPERENSEKNSKKIQKIIKPLPGIIFSQNGMR
Ga0207807_1067302	Ga0207807_10673021	F010514	VIGRKRENKFLFPNSVHARTGQENSEKNGKKIQKIIKTFPGIIFSENGMR
Ga0207807_1067718	Ga0207807_10677181	F010514	KSENEILLPNSVHTRPGQENSEKNSKKIQKIIKPLTGIIFCQNGTRKAEKEKTKF
Ga0207807_1067780	Ga0207807_10677801	F010514	SVHTRPGQDNSEKNSKKIQKIIKPLSGIIYNQNRTR
Ga0207807_1069923	Ga0207807_10699231	F038929	RLHFMMIRVRKGRKIGNKKNFIPIRSNPTRVRKLKNKCKKILKITKHHLGFISRRNGSGQAEK
Ga0207807_1072969	Ga0207807_10729691	F038929	LHFQTKRARTGRKIENKNKFLPIPSNLAQVRKFEKKCKKILEIKKRHPDLISSRNRSRQAEK
Ga0207807_1073868	Ga0207807_10738682	F031319	LRPLSSLLSLSMHKGETLKAYSDRYWEMYNEMDENHDDVAINTFNSGLSTEHGLKKSLTGKPVTSVRQLMDRIDKYKRVEKDQLQGRGKEKIIPPQRK
Ga0207807_1077309	Ga0207807_10773091	F038929	MKRVRTSQKIEKKKIFIPIRSNPTRVTKFKNKCKKILKIKQHHPGFISRGNGSGQAEK
Ga0207807_1078771	Ga0207807_10787711	F010514	RQSEHKILVPNSVHTRPGKQNSEKNSKKIQKIIKPIPGIIFSENGTRLADKMNTKF
Ga0207807_1078779	Ga0207807_10787791	F038929	RKIQNKKNFIPIRPNPTRVRKFKIKSKKILKIKKHHPGFISRRNGLGQAEK
Ga0207807_1079065	Ga0207807_10790651	F038929	FRVHFKTIRVRIGRKIENKNNFLPTRSNPARVRKFENKCKKKLKIKKHHPGFISRRNGSGQAENREQK
Ga0207807_1079806	Ga0207807_10798061	F038929	MKRVRIGRKIEKKKNFIPIRSNPTRVKKFKNKCIKILKIKKH
Ga0207807_1079806	Ga0207807_10798062	F038929	RVRTGRKIEKKKNFIPIRLNPTRVKKFKNKCKKILKIKKHYPSFILRLNGLGQAKK
Ga0207807_1081097	Ga0207807_10810971	F038929	KGRKVEKKKNFLPIRSNPTRVREFKNKCKKILKTKNYHPGFISRRNGPGQAEK
Ga0207807_1084130	Ga0207807_10841301	F010514	INAKRDEIGQKRENKILVPNCIYTRLGQENSKKNSKKIQKIIKLLPGIIFIQNGMRWAEKKKTKF
Ga0207807_1085531	Ga0207807_10855312	F038929	SSRLHFKKKRVGIGRKIDKRKNFLPIRSNPTRVRKFINKCKKILKIKKHHPGFISRRHRSGQAEK
Ga0207807_1085532	Ga0207807_10855321	F010514	PNSVHTRPRQENSEKNSKKIQKIIKPLPGIIFSQNGMRYAEKKKTKF
Ga0207807_1085533	Ga0207807_10855331	F038929	MKRVRTGQKIENKKNFIPIRSNPTRVKKFKNKCKKILKIKKHHPGFIS
Ga0207807_1095263	Ga0207807_10952631	F038929	MKRVRRGRKIEKKKNFIPIRLNPSRVTKFKNEGKKILKIKKHHPGFI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025523: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-5-D (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences