NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025540

3300025540: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-3-D (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025540 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0110114 | Gp0088363 | Ga0207748
Sample NameHigh solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-3-D (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size212031595
Sequencing Scaffolds26
Novel Protein Genes29
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available26

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameIonic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
TypeEngineered
TaxonomyEngineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationJoint BioEnergy Institute, California, USA
CoordinatesLat. (o)38.5402Long. (o)-121.75Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010514Metagenome302Y
F038929Metagenome / Metatranscriptome164Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207748_1025596Not Available1065Open in IMG/M
Ga0207748_1025845Not Available1060Open in IMG/M
Ga0207748_1032189Not Available949Open in IMG/M
Ga0207748_1038396Not Available866Open in IMG/M
Ga0207748_1039870Not Available849Open in IMG/M
Ga0207748_1046368Not Available784Open in IMG/M
Ga0207748_1051252Not Available743Open in IMG/M
Ga0207748_1052936Not Available730Open in IMG/M
Ga0207748_1057128Not Available702Open in IMG/M
Ga0207748_1057591Not Available699Open in IMG/M
Ga0207748_1060351Not Available682Open in IMG/M
Ga0207748_1066637Not Available647Open in IMG/M
Ga0207748_1070665Not Available627Open in IMG/M
Ga0207748_1075874Not Available603Open in IMG/M
Ga0207748_1076107Not Available602Open in IMG/M
Ga0207748_1081223Not Available581Open in IMG/M
Ga0207748_1081460Not Available580Open in IMG/M
Ga0207748_1083936Not Available571Open in IMG/M
Ga0207748_1085106Not Available566Open in IMG/M
Ga0207748_1088811Not Available553Open in IMG/M
Ga0207748_1093526Not Available537Open in IMG/M
Ga0207748_1095152Not Available532Open in IMG/M
Ga0207748_1096138Not Available529Open in IMG/M
Ga0207748_1101373Not Available513Open in IMG/M
Ga0207748_1104124Not Available505Open in IMG/M
Ga0207748_1104938Not Available503Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207748_1004652Ga0207748_10046522F010514VPNSVHARPRQENSEKNSKKIQKTNKPLSGVNFSQNGMR
Ga0207748_1025596Ga0207748_10255961F010514ILVPNYVHTRPGQKKSEKNSKKIQKIIKPLLGIIFSQNGMR
Ga0207748_1025845Ga0207748_10258452F010514MEDIGRKSENKILVPNSVHTRLGQENSEKNSKKIQKIIKPIPGIIFSQNGMR
Ga0207748_1030297Ga0207748_10302971F010514FLPERDEIGGNREKKNLVPNSVQTRPGQENSEKYSKKIQKIIKPLFGIIFSKNGMR
Ga0207748_1032189Ga0207748_10321891F038929GRKIENKNNFLPIRSNMAQVRKFEKKLKKILKIKQRHPGFISRRNGSGQAEK
Ga0207748_1038396Ga0207748_10383962F010514NKIFVPNSVQTRPKQDNSKKNSKKIQKIIKRPPGIISSQNGMR
Ga0207748_1039870Ga0207748_10398701F010514MGRKKENKILVPNSVHTRPEQENSEKKSKKMQKIIKPLPGIIFSQNGT
Ga0207748_1046368Ga0207748_10463681F010514DKIGRKSENKILLQISVHPRPEQENSEKNCKKIQKIIKPIPGIIFSESGMR
Ga0207748_1051252Ga0207748_10512521F038929MKRVSIGRKIETQKNFIPIRSNPTRVTKLKNKCKKILKIKKHHPGF
Ga0207748_1052936Ga0207748_10529361F010514KLDEIGRKRENKILVPNSIHTRPGKENSEKNSKIIPKIIKPIPGIISS
Ga0207748_1057128Ga0207748_10571281F010514GRKRENKILVPNSIHTRPGKENSEKNSKIIQKIIKPIPGIISS
Ga0207748_1057591Ga0207748_10575911F010514PKWYEIGRNREKKIIVPKSVHTRPGKENSEKYSKKIQKFIKPLPGIIFSQHGMS
Ga0207748_1060351Ga0207748_10603511F010514IKILVPNSVHTRPGQENSEKNRKKIQKILKPLLGIIFSQNGMR
Ga0207748_1066637Ga0207748_10666371F038929TGRKIEKKKNFLSIRSNLTRVRKFKNKCKKILKIKKHHPGFISRRNE
Ga0207748_1070665Ga0207748_10706651F038929LHFKTKRVRTGYKIENKNNFIPNRSNPTRVRKFKNKCKKILKIKKHHPGFISRRNGSGQTAK
Ga0207748_1075874Ga0207748_10758741F010514NSVLTRPGQENSEKNSKKIQKIIKPLPGIIFSQNGMQ
Ga0207748_1076107Ga0207748_10761071F010514RENKILVPNSVHTRPGKKNSEKNSKKIQKIVKPILGIIFSKNGMRYAEKEKTKF
Ga0207748_1081223Ga0207748_10812231F010514RDEIGQKSEIKILVPNSVHTRPRQENSEKNSKKIQKIIKPLPGIIFSQNGMRYAEKKKTK
Ga0207748_1081460Ga0207748_10814601F010514RPKQRKKKILVLNSVHTRPGQKNSEKNSNKIQKIKIPLFGLIFSQNWMR
Ga0207748_1083936Ga0207748_10839361F010514MVGRKSEYKILVPNFVHTRTEQENSEKNIKKIQKIIKPLPRIIFSQNG
Ga0207748_1085106Ga0207748_10851061F010514DEICQKKENKILVLNFVHARPGQENSEKNSKKIQKIIKPLPGIIYSQNEMR
Ga0207748_1086254Ga0207748_10862541F038929KIENKKNFIPIRSNPTRVRKFKNKYKKILKITKHHPGFISRRNGSGQAEK
Ga0207748_1088811Ga0207748_10888111F038929VKRVKTGRKIENKKNFIPIRLNPSRVTKLKNEGKKILKIKKHHPGFISRQNRSGQAKK
Ga0207748_1093526Ga0207748_10935261F010514IKILVPNSVHTRPRQENSEKNSKKIQKIIKPLPGIIFSQNGTRYAEKDKTKF
Ga0207748_1095152Ga0207748_10951521F038929MKRVRIGRKIEKKKNFIPIRSNPTRVTKFKNKCKKILKIKKHHPGFISRGNGSGQAEK
Ga0207748_1096138Ga0207748_10961381F038929MKRVRTGRKIENKKNFIPIRLNPSRVTKFKNEGKKILKIKKHHPGFI
Ga0207748_1101373Ga0207748_11013731F010514RDEIGQKSENKILLQNSVHIRIGQENSEKNSEKIQKIIKPLPGIIFSKNGMR
Ga0207748_1104124Ga0207748_11041241F010514VEICRKGENKILVPNSVHTRPGKENSEKNSKKIQKIIKPLPGNIFRQNGMR
Ga0207748_1104938Ga0207748_11049381F038929RTGQKIENKKNFFPIRSNPTRVRKFKNKWKKILKIEKHHPGFISRRNGSGQTGK
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