Basic Information | |
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IMG/M Taxon OID | 3300025991 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0111376 | Gp0101392 | Ga0210128 |
Sample Name | Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Tolay_CordB_D2 (SPAdes) |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 137407292 |
Sequencing Scaffolds | 28 |
Novel Protein Genes | 30 |
Associated Families | 27 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 2 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium | 1 |
All Organisms → cellular organisms → Bacteria | 4 |
Not Available | 11 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → unclassified Chryseobacterium → Chryseobacterium sp. | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius sp. associated proteobacterium Delta 1 | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium | 2 |
All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales | 1 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | 1 |
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
Location Information | ||||||||
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Location | USA: San Francisco Bay, California | |||||||
Coordinates | Lat. (o) | 38.15012 | Long. (o) | -122.438774 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005940 | Metagenome / Metatranscriptome | 386 | N |
F008422 | Metagenome / Metatranscriptome | 333 | Y |
F009188 | Metagenome / Metatranscriptome | 322 | Y |
F009400 | Metagenome / Metatranscriptome | 318 | Y |
F012874 | Metagenome / Metatranscriptome | 276 | Y |
F017486 | Metagenome / Metatranscriptome | 240 | N |
F023829 | Metagenome / Metatranscriptome | 208 | Y |
F024678 | Metagenome / Metatranscriptome | 205 | Y |
F031307 | Metagenome | 183 | Y |
F039643 | Metagenome | 163 | Y |
F040630 | Metagenome | 161 | Y |
F043801 | Metagenome / Metatranscriptome | 155 | Y |
F044339 | Metagenome / Metatranscriptome | 154 | Y |
F047065 | Metagenome / Metatranscriptome | 150 | Y |
F050382 | Metagenome / Metatranscriptome | 145 | Y |
F056621 | Metagenome | 137 | Y |
F062788 | Metagenome / Metatranscriptome | 130 | Y |
F085724 | Metagenome | 111 | Y |
F086433 | Metagenome / Metatranscriptome | 110 | Y |
F087210 | Metagenome / Metatranscriptome | 110 | Y |
F087950 | Metagenome / Metatranscriptome | 110 | Y |
F088283 | Metagenome / Metatranscriptome | 109 | Y |
F093888 | Metagenome / Metatranscriptome | 106 | Y |
F099322 | Metagenome / Metatranscriptome | 103 | Y |
F100931 | Metagenome / Metatranscriptome | 102 | Y |
F105216 | Metagenome / Metatranscriptome | 100 | Y |
F106150 | Metagenome / Metatranscriptome | 100 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
Ga0210128_1010127 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 1343 | Open in IMG/M |
Ga0210128_1010650 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium | 1316 | Open in IMG/M |
Ga0210128_1012793 | All Organisms → cellular organisms → Bacteria | 1221 | Open in IMG/M |
Ga0210128_1016180 | All Organisms → cellular organisms → Bacteria | 1107 | Open in IMG/M |
Ga0210128_1020653 | Not Available | 999 | Open in IMG/M |
Ga0210128_1022841 | Not Available | 956 | Open in IMG/M |
Ga0210128_1035068 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → unclassified Chryseobacterium → Chryseobacterium sp. | 794 | Open in IMG/M |
Ga0210128_1036946 | All Organisms → cellular organisms → Bacteria | 775 | Open in IMG/M |
Ga0210128_1038412 | Not Available | 762 | Open in IMG/M |
Ga0210128_1043613 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius sp. associated proteobacterium Delta 1 | 720 | Open in IMG/M |
Ga0210128_1043721 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 719 | Open in IMG/M |
Ga0210128_1044170 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium | 716 | Open in IMG/M |
Ga0210128_1049549 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 680 | Open in IMG/M |
Ga0210128_1050104 | Not Available | 677 | Open in IMG/M |
Ga0210128_1057375 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 638 | Open in IMG/M |
Ga0210128_1058418 | Not Available | 632 | Open in IMG/M |
Ga0210128_1064867 | All Organisms → cellular organisms → Bacteria | 603 | Open in IMG/M |
Ga0210128_1066949 | Not Available | 594 | Open in IMG/M |
Ga0210128_1067004 | Not Available | 594 | Open in IMG/M |
Ga0210128_1068754 | Not Available | 587 | Open in IMG/M |
Ga0210128_1071780 | Not Available | 576 | Open in IMG/M |
Ga0210128_1087827 | Not Available | 525 | Open in IMG/M |
Ga0210128_1088314 | Not Available | 524 | Open in IMG/M |
Ga0210128_1088821 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales | 523 | Open in IMG/M |
Ga0210128_1090048 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium | 519 | Open in IMG/M |
Ga0210128_1090191 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 519 | Open in IMG/M |
Ga0210128_1091429 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | 515 | Open in IMG/M |
Ga0210128_1096327 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 503 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0210128_1007482 | Ga0210128_10074824 | F087210 | MRFLMGVLALAGAETALAHTPDTGFLSNFGHQLTSLHHSPAAMLLGVVVL |
Ga0210128_1010127 | Ga0210128_10101274 | F040630 | PKGRGILRPIKSQSFGILNFGHCDLPFDLAQSGGESFDFAQDREPVERLVEPFDICVLLFEFFNC |
Ga0210128_1010650 | Ga0210128_10106503 | F024678 | MESEVLMRIALKLFLFFIGMALSMLGISVAIHSAHMVLGVLILVSGITTIMGSLPSYE |
Ga0210128_1012793 | Ga0210128_10127934 | F012874 | MPAKAGIQNYLISLDSRLRGNDAKGVFKTFYETINLKSSIIMG |
Ga0210128_1016180 | Ga0210128_10161802 | F050382 | ETLNYNIQISNKIKSQLFEILNFGHCDLFGICVLLFAIF |
Ga0210128_1020653 | Ga0210128_10206532 | F093888 | QLSNVTGLPPIISICALVIIFSLILFGILISIKIRNIKKALNKLNDRLDTISQRLGRQPGEFQNIQPHKYKLGSHINNEIATDGRTSLEGSNTANIAQKNGFEEHRINTEISTKIHELLKKSDKPTLYHDLAKHLSKDYPDYNYDFFLKEVEDLQKEGKVEVQLIAGKLYFQIKKT |
Ga0210128_1022841 | Ga0210128_10228411 | F009188 | KPSDKAIAAVQWLYEQVGGELRPHSSFKQTQCPGDAWRQWIVEETTPELSNKAPDKVYIPDSFESKLDKILGKLENIERKLKLGKLIQ |
Ga0210128_1035068 | Ga0210128_10350681 | F023829 | MKIKLIRSYRSKNGNPTFVYGVTGSASDLDAFKTAQGDYYREDADGTALWFTTRCVGQVGQLIITTNGNVVPDMSAYDQAASLAAQYGGNFGAELAKSAAQAILGVASP |
Ga0210128_1036946 | Ga0210128_10369461 | F047065 | KVVSSSKTHMWECVYGAYVDHLSDISTDSLPEEIQIFYDSIKLRITSVEAFGHIDNDEASYIANDIMYMADVISSDLRKP |
Ga0210128_1038412 | Ga0210128_10384122 | F039643 | MRKFWKKQVEDLGGDPSVLIKGRTQVAKEKAIALVAAHKEAITVRNAGYVIGRAACIVKNPCLDFWQGVKE |
Ga0210128_1043613 | Ga0210128_10436131 | F087950 | MQCWINGPATGGIDDKIKMAIILLKTNIPAFHHSIIPFSGPIRKPQ |
Ga0210128_1043721 | Ga0210128_10437212 | F005940 | TIASGIGGDEEVMELVNGRWLTAKLTITTSDNTQSPELLSFAVRGFQLVNDLVVDMPINISDQVERPFRKALRINGQGELIYQALRNKEGQNVQLEIFRPDTLLRGIIENVSSPVEEISPRGSVTTYCLVRFRGSKVISTSSSGEGLGIGLLGVKRLG |
Ga0210128_1044170 | Ga0210128_10441701 | F085724 | MKTILTIVMVLGMTAVYEPDSIIPKYFVDKTPQGEYRVYNSKQIVVPKYIVKPDRWGNGYQVYETGKPVLPLYRIEKRK |
Ga0210128_1049549 | Ga0210128_10495491 | F106150 | YPILSTMKVYKSTDELSKELAEVKDTLEGFKKLVEIQKKEIFELKKYVSEDIKNKNLLQGYRKVIEDISYQVRK |
Ga0210128_1050104 | Ga0210128_10501041 | F099322 | GEGSVRMVLDGVSLIRYSDGAWCRVAPPSAHDLKDNWYRSSPSLLIRWLDAVGKVRPVKSNE |
Ga0210128_1056982 | Ga0210128_10569822 | F100931 | LPNLLKNLHLEELSLVDRPANAQAMVSLFKRDNSEEEITKMNEEMEAKVKAYMDDKGCGRGEAMKALGY |
Ga0210128_1057375 | Ga0210128_10573752 | F086433 | MVRIRRWFSGKRMTVIWEEPALPEFVKINPLSPPGAAEGGLQPGDITMAANAQEFLEAEGDETALPR |
Ga0210128_1058418 | Ga0210128_10584181 | F105216 | MPTTRFHALCCAAILTAACSDEAPKPWTTREMNALSEQFGHIAEAYAVVDVCIPMIEADKDAKRRVLSKIDVRRYSQLSQLDTEAELAKFLAHHRQSGGTDEQAAALDQTYRESHQAAAQLLTSLDSCVETVIDYSNTILNTRVSTT |
Ga0210128_1064867 | Ga0210128_10648673 | F062788 | YQIAYASITGPTICNMAQGPIILEESDILKIETSDTAGISAAISLLELNRE |
Ga0210128_1066949 | Ga0210128_10669491 | F017486 | MNKIIITNAHAHGFAFACDTETQGQVFIPVHIADSFDLAPGDEINAVLVPNYQDKSDKGTPWQAVKLQRDNEVCEKAIIDNSQTLNNEALDAEMFTYILAGGYHTTAELADYFELDHKTAGNAAQRLFNSGKIAKADVFNRVGQKRPTIILWAAAAKTFIEVV |
Ga0210128_1067004 | Ga0210128_10670041 | F009400 | MSWMTGLNEIALSLWVGLDYFFFPLLILQLVAGLLARRLLPAGTPT |
Ga0210128_1068754 | Ga0210128_10687541 | F044339 | MLITLTLVVGELTDAGQRGHAVGAQAAIMVAQAVRSAEAVSSVIDGSGDRGAASDGFRTYMMMLLVGAPVLIDDPVARRFLEQAQYLGGVMARTLAVIDRSPGGPAAPGDGLDDAVRQLQSAAAPLLALLSPGIRDSIERIGQTTEE |
Ga0210128_1071780 | Ga0210128_10717801 | F047065 | MTDLLNEFSKAAMAVSSRKTQMWECVKQAYVDHLSDISTDSLPEEIQIFYDSVKLRITSVEALGHIDNDEAGYIANDIMYMADVIRSGLIKP |
Ga0210128_1087827 | Ga0210128_10878271 | F039643 | MRKFWKKQVEDLGGDPSVLIKSRTQLAKEMFIELVAAHKEAITVRNAGYVIGRAACIVKNPCVEFYKGVREGLNS |
Ga0210128_1088314 | Ga0210128_10883141 | F043801 | MFMAEKFTGVCPCGFSFTTPAGKDDAVAVMKYHAELQHKKEYPNGATTAEAMKYIKKV |
Ga0210128_1088821 | Ga0210128_10888211 | F088283 | VVPFLAACAGCATDADVAGMYVPSCVAFEGNTIELTDQRFTWDKFTDEVTVDAAGNEVDPFPGFPVRGTYTIENDVLHLTTDVGDLAALLHLVRRPGQVYLLTVTEFEAWQKGGTVPNCALLLGAGE |
Ga0210128_1090048 | Ga0210128_10900481 | F085724 | MRTLLIGMIVLGMTAVYEPNSIIPKYFVDKTPQGEYRVYDSKQIVVPKYIVKPDPWGKGYQVYETGKPVLPVYRIERKXTEAPTN |
Ga0210128_1090191 | Ga0210128_10901912 | F056621 | LNDKERFALAERIQKMTQEKHAHFRLIKRRDEIENELQVKIEDRGS |
Ga0210128_1091429 | Ga0210128_10914292 | F008422 | MGMTYQKGDVFLDKVTHKLYIFDGNEWLEIVPTSVLKKPDWT |
Ga0210128_1096327 | Ga0210128_10963272 | F031307 | LSKINTYFGFKNGKLVSVLQSVNSDAKKAIDCTYYIAQPQEFEKQIEKWKKEKTEEE |
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