Sample 3300026156

Overview

Basic Information
IMG/M Taxon OID	3300026156 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114514 \| Gp0125918 \| Ga0209936
Sample Name	Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_A_D1_MG (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	399945499
Sequencing Scaffolds	19
Novel Protein Genes	22
Associated Families	20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	11
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → Mollicutes → Acholeplasmatales → Acholeplasmataceae → unclassified Acholeplasmataceae → Acholeplasmataceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas → unclassified Halomonas → Halomonas sp. IOP_31	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium LW23	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Pond Soil → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → wetland area → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	South San Francisco, USA
Coordinates	Lat. (^o)	37.4969	Long. (^o)	-122.1331	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F007072	Metagenome	358	Y
F011397	Metagenome / Metatranscriptome	291	Y
F018909	Metagenome / Metatranscriptome	232	Y
F020177	Metagenome / Metatranscriptome	225	Y
F032166	Metagenome	180	Y
F033769	Metagenome / Metatranscriptome	176	N
F034471	Metagenome / Metatranscriptome	174	N
F035190	Metagenome / Metatranscriptome	172	Y
F035835	Metagenome / Metatranscriptome	171	Y
F042291	Metagenome	158	Y
F050177	Metagenome	145	N
F050310	Metagenome	145	Y
F052252	Metagenome / Metatranscriptome	143	Y
F055545	Metagenome	138	Y
F056035	Metagenome / Metatranscriptome	138	Y
F058175	Metagenome / Metatranscriptome	135	Y
F073153	Metagenome	120	N
F088556	Metagenome	109	Y
F093410	Metagenome / Metatranscriptome	106	Y
F101126	Metagenome / Metatranscriptome	102	Y

Family

Category

Number of Sequences

3D Structure?

F007072

Metagenome

358

F011397

Metagenome / Metatranscriptome

291

F018909

Metagenome / Metatranscriptome

232

F020177

Metagenome / Metatranscriptome

225

F032166

Metagenome

180

F033769

Metagenome / Metatranscriptome

176

F034471

Metagenome / Metatranscriptome

174

F035190

Metagenome / Metatranscriptome

172

F035835

Metagenome / Metatranscriptome

171

F042291

Metagenome

158

F050177

Metagenome

145

F050310

Metagenome

145

F052252

Metagenome / Metatranscriptome

143

F055545

Metagenome

138

F056035

Metagenome / Metatranscriptome

138

F058175

Metagenome / Metatranscriptome

135

F073153

Metagenome

120

F088556

Metagenome

109

F093410

Metagenome / Metatranscriptome

106

F101126

Metagenome / Metatranscriptome

102

Scaffold	Taxonomy	Length	IMG/M Link
Ga0209936_1000639	Not Available	20759	Open in IMG/M
Ga0209936_1001432	Not Available	12673	Open in IMG/M
Ga0209936_1004420	Not Available	6274	Open in IMG/M
Ga0209936_1010652	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	3621	Open in IMG/M
Ga0209936_1033535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → Mollicutes → Acholeplasmatales → Acholeplasmataceae → unclassified Acholeplasmataceae → Acholeplasmataceae bacterium	1744	Open in IMG/M
Ga0209936_1035210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas → unclassified Halomonas → Halomonas sp. IOP_31	1692	Open in IMG/M
Ga0209936_1042045	Not Available	1503	Open in IMG/M
Ga0209936_1058569	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium LW23	1206	Open in IMG/M
Ga0209936_1059440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1194	Open in IMG/M
Ga0209936_1120117	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	736	Open in IMG/M
Ga0209936_1120958	Not Available	733	Open in IMG/M
Ga0209936_1127430	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	707	Open in IMG/M
Ga0209936_1127482	Not Available	707	Open in IMG/M
Ga0209936_1129627	Not Available	699	Open in IMG/M
Ga0209936_1152676	Not Available	624	Open in IMG/M
Ga0209936_1158870	Not Available	607	Open in IMG/M
Ga0209936_1186896	Not Available	541	Open in IMG/M
Ga0209936_1193543	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium	528	Open in IMG/M
Ga0209936_1203444	Not Available	510	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0209936_1000639

Not Available

20759

Open in IMG/M

Ga0209936_1001432

Not Available

12673

Open in IMG/M

Ga0209936_1004420

Not Available

6274

Open in IMG/M

Ga0209936_1010652

All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon

3621

Open in IMG/M

Ga0209936_1033535

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → Mollicutes → Acholeplasmatales → Acholeplasmataceae → unclassified Acholeplasmataceae → Acholeplasmataceae bacterium

1744

Open in IMG/M

Ga0209936_1035210

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas → unclassified Halomonas → Halomonas sp. IOP_31

1692

Open in IMG/M

Ga0209936_1042045

Not Available

1503

Open in IMG/M

Ga0209936_1058569

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium LW23

1206

Open in IMG/M

Ga0209936_1059440

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

1194

Open in IMG/M

Ga0209936_1120117

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

736

Open in IMG/M

Ga0209936_1120958

Not Available

733

Open in IMG/M

Ga0209936_1127430

All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon

707

Open in IMG/M

Ga0209936_1127482

Not Available

707

Open in IMG/M

Ga0209936_1129627

Not Available

699

Open in IMG/M

Ga0209936_1152676

Not Available

624

Open in IMG/M

Ga0209936_1158870

Not Available

607

Open in IMG/M

Ga0209936_1186896

Not Available

541

Open in IMG/M

Ga0209936_1193543

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium

528

Open in IMG/M

Ga0209936_1203444

Not Available

510

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0209936_1000639	Ga0209936_100063913	F101126	MAKFLVELWLDGYDNEEEMIEACEEFIYENLNFSASSVEITYLSDEDEKI
Ga0209936_1001432	Ga0209936_100143227	F093410	MKEYAIQKQLIPIDQGSDPNWSKRQVWVYRINGQDQVDEFDTVVEAEAKRDELESNDPTARVYRVVRRLDTVNFEVVE
Ga0209936_1004420	Ga0209936_10044205	F050310	MANMQSFIIGIVLVGVTLVIGIFISAEIADQMEVNSSEANAANDLVTALSGGSAWITILVVVGFATIVLSMLTSGLGGRSSDVGPVY
Ga0209936_1010652	Ga0209936_10106525	F050310	MANMQSFIIGIVLVGVTLVIGIFISSEIADQMDTGSAEANAANDLVTALSGGSAWITILVVVGFATIVLSMLTSGLGGSADVGPVYX
Ga0209936_1033535	Ga0209936_10335354	F018909	MKWVKVAVGAVVAISVIPTIVTSVNELTGVEGDLAGTTAGTLLDLAPLVFVASILGYLFLKTGQ
Ga0209936_1033535	Ga0209936_10335355	F018909	LFMKWIKIAIGAVVAISVIPTIVTSVTALTGTGGALEGEVAGTLLDLAPLVFVASILAFLFTKTGQ
Ga0209936_1035210	Ga0209936_10352103	F033769	MSVNCGIKTATNTPATVGVATGRKYLRLTNESLDMRCRAGDDGISNTAGIIIEPGETVEFRPLPSDNTDIYVMSEGKATKLAYYEVL
Ga0209936_1042045	Ga0209936_10420452	F042291	MPTYQSYNKRINAWVKYHWTKEGWEVKDVKQREPKKPFKGVPKKGKGRK
Ga0209936_1058569	Ga0209936_10585691	F035190	MIKELYIRNPEDPNYKINVLDHSDPIESIISKIKMILGTRKGEVIGDFNFGLGIEDLIFETRINKLNLEENIRNQINTYIDESADYKIDPEVSFGRAKEGYDYCVIDIYIDNNKTYGILV
Ga0209936_1059440	Ga0209936_10594404	F055545	QLLKLRTVGGAKVKADVIASHAPNIAHRAANGNLVSGGEH
Ga0209936_1120117	Ga0209936_11201172	F052252	MSNYNPNEFVNPQQIRSPYTGETSRPTFNHFTQDGKSYEQAVFSDPVTGHMIKKGIVSIKDAESGETIADYNTVHSFSSTVQSR
Ga0209936_1120958	Ga0209936_11209581	F050177	MVRIPSDPPDDELTPRQLYDRFEEVTNLTASELKAFRDSEYNQEYLEGNSDRAQRGNEPLDDVITLLETPPEQWRDVEDGFNEIAEAREMLDFQRRTQAQIKSQGLGSNTLPEY
Ga0209936_1127430	Ga0209936_11274301	F007072	VMIVGFVFLIMATIAYVSEQYGDALTENGSAANITDDLESELSDNTSIAGIVLTISLVGIVLSVLIGIFVSSRRGGM
Ga0209936_1127482	Ga0209936_11274823	F032166	LLETPPEQWRDVEDGFNEIAEAREMLDFQRRTQAQIKSQGLGSNTIAEYDDMTFREAASIRWGIDPDDEREWL
Ga0209936_1129627	Ga0209936_11296272	F058175	VTAATDDVTMGYALEDAVDGQVFAIELIQGGNAAA
Ga0209936_1152676	Ga0209936_11526762	F056035	MSLLYKPKEEQTITCEIKQEDGKIILDFYSDCGKFGTDEMLDGYKLTPERLLQILQDRDDYSEDEL
Ga0209936_1158870	Ga0209936_11588702	F073153	MPIRDEIRRIDGNIEGILTRLGNQSETIARIDLLVEEMQDMQTELEHIEVRLNTLESRID
Ga0209936_1181161	Ga0209936_11811612	F088556	KEIRKDLYTQAEYAKKIGKHRSWVNQQIKLGNIKTVTINGAILVKA
Ga0209936_1186896	Ga0209936_11868961	F011397	MKDFELLKRTYPVSEFDRQCDGFAYICDNTSVEERMEWRINLKELQHIIKSGEKYIYQVAKEGKVFKAMCLSFSNYEIIRKYIFRIDDE
Ga0209936_1188159	Ga0209936_11881592	F034471	VSSKQQTKLIKHWQSKDYFVINLVKITPAGLPDLLALKPNEVVF
Ga0209936_1193543	Ga0209936_11935431	F020177	MDINLDNTYWDRLRGFVTELRVDARWVLRNEGDDKPFGSLRIVSHPDLPPGHLRAIFTYVVDIREKNDAQKMQATEDYQMEMTELEVYSVDDEIKTETEKIEAPYKELESIFEVKIFE
Ga0209936_1203444	Ga0209936_12034441	F035835	MKRKQTDPVLGVTHGSLRTMLKSALRPIWRATSRKKFIESVRRHDINPKTGRQWFVVDCVDCGRVMGCSEKERRPLAKGGLSKKERSVFEVDHIDGITPLGDIKETLGPHVHDLLYGKQEIVCYKCHAKRTAN

Scaffold ID

Protein ID

Family

Sequence

Ga0209936_1000639

Ga0209936_100063913

F101126

MAKFLVELWLDGYDNEEEMIEACEEFIYENLNFSASSVEITYLSDEDEKI

Ga0209936_1001432

Ga0209936_100143227

F093410

MKEYAIQKQLIPIDQGSDPNWSKRQVWVYRINGQDQVDEFDTVVEAEAKRDELESNDPTARVYRVVRRLDTVNFEVVE

Ga0209936_1004420

Ga0209936_10044205

F050310

MANMQSFIIGIVLVGVTLVIGIFISAEIADQMEVNSSEANAANDLVTALSGGSAWITILVVVGFATIVLSMLTSGLGGRSSDVGPVY

Ga0209936_1010652

Ga0209936_10106525

F050310

MANMQSFIIGIVLVGVTLVIGIFISSEIADQMDTGSAEANAANDLVTALSGGSAWITILVVVGFATIVLSMLTSGLGGSADVGPVYX

Ga0209936_1033535

Ga0209936_10335354

F018909

MKWVKVAVGAVVAISVIPTIVTSVNELTGVEGDLAGTTAGTLLDLAPLVFVASILGYLFLKTGQ

Ga0209936_1033535

Ga0209936_10335355

F018909

LFMKWIKIAIGAVVAISVIPTIVTSVTALTGTGGALEGEVAGTLLDLAPLVFVASILAFLFTKTGQ

Ga0209936_1035210

Ga0209936_10352103

F033769

MSVNCGIKTATNTPATVGVATGRKYLRLTNESLDMRCRAGDDGISNTAGIIIEPGETVEFRPLPSDNTDIYVMSEGKATKLAYYEVL

Ga0209936_1042045

Ga0209936_10420452

F042291

MPTYQSYNKRINAWVKYHWTKEGWEVKDVKQREPKKPFKGVPKKGKGRK

Ga0209936_1058569

Ga0209936_10585691

F035190

MIKELYIRNPEDPNYKINVLDHSDPIESIISKIKMILGTRKGEVIGDFNFGLGIEDLIFETRINKLNLEENIRNQINTYIDESADYKIDPEVSFGRAKEGYDYCVIDIYIDNNKTYGILV

Ga0209936_1059440

Ga0209936_10594404

F055545

QLLKLRTVGGAKVKADVIASHAPNIAHRAANGNLVSGGEH

Ga0209936_1120117

Ga0209936_11201172

F052252

MSNYNPNEFVNPQQIRSPYTGETSRPTFNHFTQDGKSYEQAVFSDPVTGHMIKKGIVSIKDAESGETIADYNTVHSFSSTVQSR

Ga0209936_1120958

Ga0209936_11209581

F050177

MVRIPSDPPDDELTPRQLYDRFEEVTNLTASELKAFRDSEYNQEYLEGNSDRAQRGNEPLDDVITLLETPPEQWRDVEDGFNEIAEAREMLDFQRRTQAQIKSQGLGSNTLPEY

Ga0209936_1127430

Ga0209936_11274301

F007072

VMIVGFVFLIMATIAYVSEQYGDALTENGSAANITDDLESELSDNTSIAGIVLTISLVGIVLSVLIGIFVSSRRGGM

Ga0209936_1127482

Ga0209936_11274823

F032166

LLETPPEQWRDVEDGFNEIAEAREMLDFQRRTQAQIKSQGLGSNTIAEYDDMTFREAASIRWGIDPDDEREWL

Ga0209936_1129627

Ga0209936_11296272

F058175

VTAATDDVTMGYALEDAVDGQVFAIELIQGGNAAA

Ga0209936_1152676

Ga0209936_11526762

F056035

MSLLYKPKEEQTITCEIKQEDGKIILDFYSDCGKFGTDEMLDGYKLTPERLLQILQDRDDYSEDEL

Ga0209936_1158870

Ga0209936_11588702

F073153

MPIRDEIRRIDGNIEGILTRLGNQSETIARIDLLVEEMQDMQTELEHIEVRLNTLESRID

Ga0209936_1181161

Ga0209936_11811612

F088556

KEIRKDLYTQAEYAKKIGKHRSWVNQQIKLGNIKTVTINGAILVKA

Ga0209936_1186896

Ga0209936_11868961

F011397

MKDFELLKRTYPVSEFDRQCDGFAYICDNTSVEERMEWRINLKELQHIIKSGEKYIYQVAKEGKVFKAMCLSFSNYEIIRKYIFRIDDE

Ga0209936_1188159

Ga0209936_11881592

F034471

VSSKQQTKLIKHWQSKDYFVINLVKITPAGLPDLLALKPNEVVF

Ga0209936_1193543

Ga0209936_11935431

F020177

MDINLDNTYWDRLRGFVTELRVDARWVLRNEGDDKPFGSLRIVSHPDLPPGHLRAIFTYVVDIREKNDAQKMQATEDYQMEMTELEVYSVDDEIKTETEKIEAPYKELESIFEVKIFE

Ga0209936_1203444

Ga0209936_12034441

F035835

MKRKQTDPVLGVTHGSLRTMLKSALRPIWRATSRKKFIESVRRHDINPKTGRQWFVVDCVDCGRVMGCSEKERRPLAKGGLSKKERSVFEVDHIDGITPLGDIKETLGPHVHDLLYGKQEIVCYKCHAKRTAN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026156: Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_A_D1_MG (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences