NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026395

3300026395: Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0935-MT (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300026395 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114432 | Gp0296233 | Ga0256784
Sample NameMetatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0935-MT (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size80176562
Sequencing Scaffolds11
Novel Protein Genes11
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available6
All Organisms → cellular organisms → Eukaryota3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameEnriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → research facility → soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: Iowa
CoordinatesLat. (o)42.0Long. (o)-93.0Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005470Metagenome / Metatranscriptome399Y
F033655Metagenome / Metatranscriptome176Y
F034478Metagenome / Metatranscriptome174Y
F035602Metagenome / Metatranscriptome171Y
F052990Metagenome / Metatranscriptome141Y
F059585Metagenome / Metatranscriptome133Y
F071833Metagenome / Metatranscriptome121Y
F096377Metagenome / Metatranscriptome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0256784_1011585Not Available1287Open in IMG/M
Ga0256784_1014158Not Available1160Open in IMG/M
Ga0256784_1028903All Organisms → cellular organisms → Eukaryota758Open in IMG/M
Ga0256784_1030351All Organisms → cellular organisms → Eukaryota735Open in IMG/M
Ga0256784_1031237Not Available722Open in IMG/M
Ga0256784_1032297All Organisms → cellular organisms → Eukaryota707Open in IMG/M
Ga0256784_1032548All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia703Open in IMG/M
Ga0256784_1033361Not Available692Open in IMG/M
Ga0256784_1035029Not Available671Open in IMG/M
Ga0256784_1040025All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea614Open in IMG/M
Ga0256784_1050151Not Available528Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0256784_1011585Ga0256784_10115851F035602MSVSNEIKSWLETYPRLNWRLTFDFLLAPENAKAVEFSDYGVACFVKGFQKEFIDRDYNEALNWYETGAMQYDSLCLFRLHEVYIGDTHFKVPYDERQALCHLIYSALLSQFEIFDTKVSFWQKFEAFWKKESSKTAYIQELLISPSADYFVATGGLFSKLFTFYATKNNFPDILPELKNLSTDILKTKFFSIINAMFDFLAYTYNSGFSKVDLQKYVETILDMLTNDILFDNFFQNYITHIKLLRAKKKFAHVFQRRLETDCFWVWSFSFLVSMKNYYLGILQSYDETFCDGSLVLKWKNTASWVNNFVGFCCEKGIGTSKDNNKALEAYDRDMREMPRVLFSRFRHILIRKQALMKGQQPFQEEVDPQLEAEVTELKSMIEGRFEDQNRMDCYLYYVYGKVYEKIDEDIDTAIQ
Ga0256784_1014158Ga0256784_10141581F034478MEIEQNTLHRNRPTILRKVVLYGQPQEGKNSFDHREEAEPVGNFLSQCRIDSISLWFLRTDNQNVALQGICSSYKKLNEDNFFESFESVDDKIKNSDRDYDIVHFDDGEYIKAINITEASANGKIGAIEFVTTNKGRKVLAYGSANANAEEGKQAEPLPPGETKTFDFLKSEGENFPGYVVGFFGQYDENHITYLGVYVAPLTEVNYYARRAYILTYKKLQQDKNLINDIAKKLGVEKEGERFKDANLEDADNNSSRIFLYFLDASLNHPELFKAVLEYL
Ga0256784_1028903Ga0256784_10289031F096377LKINNNSDLVQIQSKYKSTALYFIPTDDNNVNIFITDNDAIINDILGQEDIIEDVVSKLFAKLDRNPTPFQEDLWLPIFSIKEKTIDLEAAKTLLKDEYKVNYATNTCTIGLNGSRVPGNLKVRPNEKSKIIEKPFLFGILHEQVDFPLFAVVVKPEDFAQHE
Ga0256784_1030351Ga0256784_10303511F005470FCSLPTSNMSVKVRKEGQVITEFPKEMVPRSRLLTKLVEEFSSTEVDLEPAPGKDFSPATINKVREFLAKFEKGLHKMPKKPLLIFVTYNDWLDNNFDENTREWLEEFLKPKSFYELVELFNAAFYLQIDDLREISAARIAHSIILERKAPEDFLRDFGIATQYQDFFTPEEEAKFIEKEFINKNDYEGVAAEDDEELNKE
Ga0256784_1031237Ga0256784_10312371F071833LTTKNTSFLIMNFSSEFTQDPQQNINLVQILIKRKLIEPFEKLSRESVECYNLQKGTKEANNEYATRVNKCLDSWQKHFERVEDHTNKYLSNLRAKEALHFSKLFHCSNAINDKDIDACRKEENHRFATELKETFSQL
Ga0256784_1032297Ga0256784_10322972F096377YRWKSFNVTHHKVAGKDRKYLKIDNNSDLVQFQSKYKSTPLYFIPTDDHNVNVFITDNDAIINDILGQEDIIEDVVSKLFAKLDRNPTPFQEDLWLPIFSIKEKAIDLEAAKTLLKDEYKVNYATNTCTIGLNGSRVPGNLKVRPSEKSKIIEKPFLFGILHEQVDFPLFAVVVKPEDFAHHE
Ga0256784_1032548Ga0256784_10325481F059585FWNKYPHKDLDFVVYNRVIDIKRLEDDSIVVKKLMFCKKFKLIWAYTMEEMKIDFDQKILDLKTKVLAASKCIPTEGVERICYQALHNEQGKTLYTKFLESRSTLQKYYGKLNSGFEKGCKIVEEKCNEVLNKGGDSQSN
Ga0256784_1033361Ga0256784_10333611F071833NIKQSNQKTMNLSSDYTQDPQQNINLVQILIKRKLIEPFEKLSKENVECYNLERGTLEGKPQYFERVNKCLDSWQRHFERVESNTNQYLSKLREKEASHFSKLFHCSNAIDDPEIQACRKEENERFANELKDTFSQL
Ga0256784_1035029Ga0256784_10350292F059585FWNKYPHKDLDFVVYNRVIDIKRLEDDSIVVKKLMFCKKFKLIWAYTMEEMKIDFDQKILDLKTKVLAASKCIPTEGVERICYQALHNEQGKTLYTKFLESRSTLQKYYGKLNSGFEKGCKIVEEKCNEVLNKASDSQSN
Ga0256784_1040025Ga0256784_10400251F033655VDSLFSVLSALLLSGTFNDDVGEVGHTDSLEHFLSVGSDGNSVDVDLGLVRDVVQSSFSFFFLDLERDTSDGTTSLDSLHQMGSETGDFISHSLGGEDTDIAQDLLVEVEISGELAVVLFDQDLGGSLNSLSSDSSHGLRVYFD
Ga0256784_1050151Ga0256784_10501511F052990ELKSMIEGRFEDQNRMDCYLYYVYGKVYEKIDEDIDTAIQWYQKGVDSDTESCLKNHLLCNEGWRMKCDKRLQKLKLKKGLQTLIINKNQED
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