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Sample 3300026424
3300026424: Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0922-MT (Metagenome Metatranscriptome)
Overview
Basic Information
IMG/M Taxon OID 3300026424 Open in IMG/M GOLD Reference Gs0114432 | Gp0296220 | Ga0256771 Sample Name Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0922-MT (Metagenome Metatranscriptome) Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 151638728 Sequencing Scaffolds 4 Novel Protein Genes 4 Associated Families 2
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds Not Available 1 All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff 3
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling Type Environmental Taxonomy Environmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling
Alternative Ecosystem Assignments
Environment Ontology (ENVO) terrestrial biome → research facility → soil Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
Location Information
Location USA: Iowa Coordinates Lat. (o ) 42.0 Long. (o ) -93.0 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F051903 Metagenome / Metatranscriptome 143 Y F098404 Metagenome / Metatranscriptome 103 N
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0256771_1036244 Not Available 1075 Open in IMG/M Ga0256771_1063171 All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff 666 Open in IMG/M Ga0256771_1082338 All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff 533 Open in IMG/M Ga0256771_1083734 All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff 525 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0256771_1036244 Ga0256771_10362442 F051903 MCEQIAKMRRKIQRIGPKHFLFLDETHKREGDVLSYTIVLPGEPPYIETSTTSSYASRYDMIACCSMGTALPPIIYSASERGRGVTQEMLLDYIRNLLGQAAGSLDVYPLYLVVDRATIHNPQKILQEFHDWGCQELVEVLLMPPAAAKRLSPLDNALLNRWRQSLLEGGPLTRQSIRTRMSEAWNHITKDDIQQQYRHCGLMRKQDPYYDCPNPTIHRHNR Ga0256771_1063171 Ga0256771_10631711 F098404 FSLDPQHIMRSALFFVVLAVAVACAAAAVRPKLSETFESNGFVSIKHNGTLFFGEGWYHVSQPDGKALEAYAFGGFDHLNVYELQRFDKGKAYEVIHDEKKPICHTKSLTGKMPQLWDWVEKADFVRNFTSAGTLYDLWSYKTAGITLEVGVPQAHPDILAYFGRFSAGNEFSYFVETWKNIKPHSTWFEIPRECHLGPK Ga0256771_1082338 Ga0256771_10823381 F098404 LALAIACAAAQQTRPKLSETFESKGFVQIKHNGTLFFGEGWYHVSQPDGKALEAYAFGGAEHLNVYELQRFDKGKAFEVIHAGHDKSPICHTKSLTGKMPQLWDWVEKADYVRNFTANGSKFDLWGYKTAGITLEVAVPVGHPDILAFFGRRSANEDFGYYLEEYKTQKPHSTWFDI Ga0256771_1083734 Ga0256771_10837341 F098404 SDSTHTVMRSFLVCVVLALAIACAAAQQTRPKLSETFESKGFVQIKHNGTLFFGEGWYHVSQPDGKALEAYAFGGAEHLNVYELQRFDKGKAFEIIHDVKKPICHTKPLTGKMPQLWDWVEKADYVRNFTANGSKFDLWGYKTAGITLEVAVPVGYPSILAYFGRFSAGNEFSYY
