Sample 3300026431

Overview

Basic Information
IMG/M Taxon OID	3300026431 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114432 \| Gp0296221 \| Ga0256772
Sample Name	Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0923-MT (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	159671951
Sequencing Scaffolds	2
Novel Protein Genes	2
Associated Families	2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → research facility → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	USA: Iowa
Coordinates	Lat. (^o)	42.0	Long. (^o)	-93.0	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F034190	Metagenome / Metatranscriptome	175	Y
F098404	Metagenome / Metatranscriptome	103	N

Family

Category

Number of Sequences

3D Structure?

F034190

Metagenome / Metatranscriptome

175

F098404

Metagenome / Metatranscriptome

103

Scaffold	Taxonomy	Length	IMG/M Link
Ga0256772_1028167	Not Available	1279	Open in IMG/M
Ga0256772_1081958	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff	572	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0256772_1028167

Not Available

1279

Open in IMG/M

Ga0256772_1081958

All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff

572

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0256772_1028167	Ga0256772_10281672	F034190	VADSGSMLPNNFLRTARYRTPNDRHSRNPDQPSLLTIVSESIVPTPLHLFLGISNRIILDAYKELFGESVVLEAVQSIKTVHSAGCSGASDLHELNGPEISKWIKKQCSTSMLTSTASISSLPDATKATHSVLSRWLLQLHSCLLHSRDWMPSEIEAWRGIVDDIHQHWCTETSSEAFPKLHMLHHTVDFAERHRFLGRASEAQIESFHFQFNSLFHKQHC
Ga0256772_1081958	Ga0256772_10819581	F098404	AVRPKLSETFESNGFVSIKHNGTLFFGEGWYHVSQPDGKALEAYAFGGFDHLNVYELQRFDKGKAYEVIHDEKKPICHTKSLTGKMPQLWDWVEKADFVRNFTSAGTLYDLWSYKTAGITLEVGVPQAHPDILAYFGRFSAGNEFSYFVETWKNIKPHSTWFEIPRECHLGPK

Scaffold ID

Protein ID

Family

Sequence

Ga0256772_1028167

Ga0256772_10281672

F034190

VADSGSMLPNNFLRTARYRTPNDRHSRNPDQPSLLTIVSESIVPTPLHLFLGISNRIILDAYKELFGESVVLEAVQSIKTVHSAGCSGASDLHELNGPEISKWIKKQCSTSMLTSTASISSLPDATKATHSVLSRWLLQLHSCLLHSRDWMPSEIEAWRGIVDDIHQHWCTETSSEAFPKLHMLHHTVDFAERHRFLGRASEAQIESFHFQFNSLFHKQHC

Ga0256772_1081958

Ga0256772_10819581

F098404

AVRPKLSETFESNGFVSIKHNGTLFFGEGWYHVSQPDGKALEAYAFGGFDHLNVYELQRFDKGKAYEVIHDEKKPICHTKSLTGKMPQLWDWVEKADFVRNFTSAGTLYDLWSYKTAGITLEVGVPQAHPDILAYFGRFSAGNEFSYFVETWKNIKPHSTWFEIPRECHLGPK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026431: Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0923-MT (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences