NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026433

3300026433: Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0928-MT (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300026433 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0114432 | Gp0296226 | Ga0256777
Sample NameMetatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0928-MT (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size159074174
Sequencing Scaffolds2
Novel Protein Genes2
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameEnriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biomeresearch facilitysoil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: Iowa
CoordinatesLat. (o)42.0Long. (o)-93.0Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034190Metagenome / Metatranscriptome175Y
F051903Metagenome / Metatranscriptome143Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0256777_1019329Not Available1599Open in IMG/M
Ga0256777_1028377Not Available1214Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0256777_1019329Ga0256777_10193293F051903MCEQIASVRRKLQRIGTQHILFLDETHKREGDSESYTIVLPGEPPYIETPSTSSYATRYDMIACCSGTTTLPAIIYSPKERDKGITQEMLLEYIRNLLAQAAGALDIYPIVLALDRSPNNEANVMEAFHDWGCQEMTEVIKIPPAAAKRLSPLDNSLFNLWRSKVLDGGPLTRHNIRTRMSDAWNQITKEQIHAQYKHCGLLRGQDAYFDCPNPAVHKHSSSK
Ga0256777_1028377Ga0256777_10283771F034190VADSGSMLPNNFLRTARYRTPNDRHSRNPDQPSLLTIVSESIVPTPLHLFLGISNRIILDAYKELFGESVVLEAVQSIKTVHSAGCSGASDLHELNGPEISKWIKKQCSTSMLTSTASISSLPDATKATHSVLSRWLLQLHSCLLHSRDWMPSEIEAWRGIVDDIHQHWCTETSSEAFPKLHMLHHTVDFAERHRFLGRASEAQIESF

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