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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026445 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114432 | Gp0296231 | Ga0256782 |
| Sample Name | Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0933-MT (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 189885166 |
| Sequencing Scaffolds | 10 |
| Novel Protein Genes | 10 |
| Associated Families | 7 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Scuticociliatia → Philasterida → Uronematidae → Uronema → Uronema marinum | 1 |
| All Organisms → cellular organisms → Eukaryota | 3 |
| Not Available | 3 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia | 1 |
| All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → research facility → soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Iowa | |||||||
| Coordinates | Lat. (o) | 42.0 | Long. (o) | -93.0 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003289 | Metagenome / Metatranscriptome | 495 | Y |
| F005470 | Metagenome / Metatranscriptome | 399 | Y |
| F052990 | Metagenome / Metatranscriptome | 141 | Y |
| F059585 | Metagenome / Metatranscriptome | 133 | Y |
| F071833 | Metagenome / Metatranscriptome | 121 | Y |
| F096377 | Metagenome / Metatranscriptome | 104 | Y |
| F098404 | Metagenome / Metatranscriptome | 103 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0256782_1002817 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea | 3790 | Open in IMG/M |
| Ga0256782_1004118 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Scuticociliatia → Philasterida → Uronematidae → Uronema → Uronema marinum | 3229 | Open in IMG/M |
| Ga0256782_1046260 | All Organisms → cellular organisms → Eukaryota | 1024 | Open in IMG/M |
| Ga0256782_1049167 | All Organisms → cellular organisms → Eukaryota | 986 | Open in IMG/M |
| Ga0256782_1066137 | Not Available | 810 | Open in IMG/M |
| Ga0256782_1074681 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia | 743 | Open in IMG/M |
| Ga0256782_1076367 | All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff | 731 | Open in IMG/M |
| Ga0256782_1106642 | Not Available | 572 | Open in IMG/M |
| Ga0256782_1111939 | All Organisms → cellular organisms → Eukaryota | 551 | Open in IMG/M |
| Ga0256782_1122498 | Not Available | 515 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0256782_1002817 | Ga0256782_10028171 | F003289 | MXGNIVTEVALQTNFGVGFNNTQSDVLIHLTQXQYWXXFXFSFLXAFYYLVILRIIRFRTLKFRPRLATTYRPHGKXGDLIICLIPISXCVNIITNSSFILKMIEWQAETGLLTIRIRGKQWYXIYKFELKTFTDILTVPKNVGRNKXQISTPGDLQVADDYLHILQLRSQNKXVKKYXNDLSQKFYRNKNFHLISPQEQLKFNFYQNLTNYEFLKNSKKLKI |
| Ga0256782_1004118 | Ga0256782_10041181 | F003289 | MXGNIVTEVALQTNFGVGFNNTQSDVLIHLTQXQYWWXFXFSFLXAFYYLVILRIIRFRTLKFRPRLATTYRPHGKXGDLIICLIPISWCVNIITNSSFILKMIEXQAETGLLTIRIRGKQXYXIYKFELKTFTDILTVPKNVGRNKXQISTPGDLQVADDYLHILQLRSQNKXVKKYXNDLSQKFYRNKNFHLISPQEQLKFNFYQNLTNYEFLKNSKKLKI |
| Ga0256782_1046260 | Ga0256782_10462601 | F005470 | FCSLPTSNMSVKVRKEGQVITEFPKEMVPRSRLLTKLVEEFSSTEVDLEPAPGKDFSPATINKVREFLAKFEKGLHKMPKKPLLIFVTYNDWLDNNFDENTREWLEEFLKPKSFYELVELFNAAFYLQIDDLREISAARIAHSIILERKAPEDFLRDFGIATQYQDFFTPEEETKFIEKEFINKNDYEGVAAEDDEELNKE |
| Ga0256782_1049167 | Ga0256782_10491671 | F005470 | NIYQISISTNMSAINLRKEGQVITEFPPNLIKRSRLLTKLVEEFSSTEVDLEPAPGKDFSPATINKLKEFIVRFESGLPKLPKKPLLIFVTYNDWLDNNFPEDTREWLEEFFKPKSFYDLVELFNAAFYLQIDDLREICAARIAHSIILERKAPEDFLRDFGIVTSYQDFFTPEEEAKFIEKEFINKNDYEGVAAEDDEELNKE |
| Ga0256782_1066137 | Ga0256782_10661371 | F071833 | EFTQDPQQNINLVQILIKRKLIEPFEKLSRESVECYNLQKGTKEANNEYATRVNKCLDSWQKHFERVEDHTNKYLSNLRAKEALHFSKLFHCSNAINDKDIDACRKEENHRFATELKETFSQL |
| Ga0256782_1074681 | Ga0256782_10746811 | F059585 | QAFWNKYPHKDLDFVVYNRVIDIKRLEDDSIVVKKLMFCKKFKLIWAYTMEEMKIDFDQKILDLKTKVLAASKCIPTEGVERICYQALHNEQGKTLYTKFLESRSTLQKYYGKLNSGFEKGCKIVEEKCNEVLNKGGDSQSN |
| Ga0256782_1076367 | Ga0256782_10763671 | F098404 | MRSFLVCVVLALAIACAAAQQTRPKLSETFESKGFVQIKNNGTLFFGEGWYHVSQPDGKALEAYAFGGAEHLNVYELQRFDKGKAFEVIHAGHDKTPICHTKSLTGKMPQLWDWVEKADYVRNFTANGSKFDLWGYKTAGITLEVAVPVGYPDILAYFGRFSAGNEFSYYIEQWKTDKPHSTWFEIPKECHLGPK |
| Ga0256782_1106642 | Ga0256782_11066421 | F052990 | GERLTEEEENMNLEVQAEDLKQKIEERLEDSNRMDCYLFYVYGKIYEKIDEDIDRAIEWYQKGADVDTDSCLKNHLLCNEAWRIKCNKRLLKLQARKGLQVIIVNKNRED |
| Ga0256782_1111939 | Ga0256782_11119391 | F096377 | SFNVTHHKVAGKDRKYLKINNNSDLVQFQSKYKSTPLYFIPTDDNNVNIFITDNDAIINDILGQEDIIEDVVSKLFAKLDRNPTPFQEDLWLPIFSIKEKTIDLEAAKTLLKDEYKVNYATNTCTIGLNGSRVPGNLKVRPNEKSKIIEKPFLFGILHEQVDFPLFAVVVKPEDFAQHE |
| Ga0256782_1122498 | Ga0256782_11224982 | F071833 | NQKTMNLSSDYTQDPQQNINLVQILIKRKLIEPFEKLSKENVECYNLERGTLEGKPQYFERVNKCLDSWQRHFERVESNTNQYLSKLREKEASHFSKLFHCSNAIDDPEIQACRKEENERFANELKDTFSQL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |