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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026493 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114432 | Gp0296235 | Ga0256786 |
| Sample Name | Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0937-MT (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 308542029 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 7 |
| Associated Families | 6 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | 1 |
| Not Available | 4 |
| All Organisms → cellular organisms → Eukaryota | 1 |
| All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → research facility → soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Iowa | |||||||
| Coordinates | Lat. (o) | 42.0 | Long. (o) | -93.0 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002654 | Metagenome / Metatranscriptome | 539 | Y |
| F051903 | Metagenome / Metatranscriptome | 143 | Y |
| F054554 | Metagenome / Metatranscriptome | 139 | Y |
| F071833 | Metagenome / Metatranscriptome | 121 | Y |
| F096377 | Metagenome / Metatranscriptome | 104 | Y |
| F098404 | Metagenome / Metatranscriptome | 103 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0256786_1011005 | All Organisms → cellular organisms → Eukaryota → Opisthokonta | 2957 | Open in IMG/M |
| Ga0256786_1092633 | Not Available | 798 | Open in IMG/M |
| Ga0256786_1118327 | Not Available | 674 | Open in IMG/M |
| Ga0256786_1143555 | Not Available | 589 | Open in IMG/M |
| Ga0256786_1149789 | Not Available | 572 | Open in IMG/M |
| Ga0256786_1156407 | All Organisms → cellular organisms → Eukaryota | 555 | Open in IMG/M |
| Ga0256786_1169631 | All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff | 524 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0256786_1011005 | Ga0256786_10110052 | F002654 | LNYQTFNDKVEGQKGNSPEQVFKVPKFLLSESKEVFKLYNQEIGLEAAIF |
| Ga0256786_1092633 | Ga0256786_10926331 | F051903 | EEMSPEMCEQIAQVRRKPQRIGIGHILFLDETHKREGDVDSYSIFLPGEPPIIETSTTSPYAARYDMIACCSGHTVLPPIIYAPKERGKGVNQDMLLQFIRNPLAQAAGALDQYPLLLLLDKATIHSEAKILQEFHDWGCQELTEVLRIPTASAKRLSPLDNSLFNLWRQRVLASGALTKTNIKSRMSDAWNSFTSAELRAQYRHCGLLRHQNVYFDCPDPASHRHDS |
| Ga0256786_1118327 | Ga0256786_11183271 | F054554 | MLGKIKKGMGDVKASADIETEYLMAKNKNNFDHPAENGVRIKAYQDAFTAADDFLDRIKAWTDRYQDLINAEIKMLEKMNASASLASISSIFSTFSGAQNNVIQIRQQQLGKVIEYIQTPAKKFIGDQTPIRNKIDQTNKAWIELRYWKKKGGKHVEEEKNAQTAYDEHISALFRMFDTNIDAQVAQWVKYFADFEVEFF |
| Ga0256786_1143555 | Ga0256786_11435551 | F071833 | SINIKQPNQKTMNLSSDYTQDPQQNINLVQILIKRKLIEPFEKLSKENVECYNLERGTLEGKPQYFERVNKCLDSWQRHFERVESNTNQYLSKLREKEASHFSKLFHCSNAINDPEIQACRKEENERFANELKDTFSQL |
| Ga0256786_1149789 | Ga0256786_11497891 | F071833 | PNQKTMNLSSDYTQDPQQNINLVQILIKRKLIEPFEKLSKENVECYNLERGTLEGKPQYFERVNKCLDSWQRHFERVESNTNQYLSKLREKEASHFSKLFHCSNAIDDPEIQACRKEENERFANELKDTFSQL |
| Ga0256786_1156407 | Ga0256786_11564071 | F096377 | SFNVTHHKVAGKDRKYLKINNNSDLVQFQSKYKSTPLYFIPTDDNNVNIFITDNDAIINDILGQEDIIEDVVSKLFAKLDRNPTPFQEDLWLPIFSIKEKSIDLEAAKTLLKDEYKVNYATNTCTIGLNGSRVPGNLKVRPNEKSKIIEKPFLFGILHEQVDFPLFAVVVKPEDFAQHE |
| Ga0256786_1169631 | Ga0256786_11696311 | F098404 | NGTLFFGEGWYHVSQPDGKALEAYAFGGAEHLNVYELQRFDKGKAFEVIHAGHDKSPICHTKPLTGKMPQLWDWVEKADYVRNFTANGSKFDLWGYKTAGITLEVAVPVGYPSILAYFGRFSAGNEFSYYIEQWKTDKPHSTWFEIPKECHLGPK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |