Sample 3300026658

Overview

Basic Information
IMG/M Taxon OID	3300026658 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095510 \| Gp0072123 \| Ga0207573
Sample Name	Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G09K4-12 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	6275265
Sequencing Scaffolds	7
Novel Protein Genes	8
Associated Families	8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Rhodoblastus → Rhodoblastus acidophilus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	USA: Michigan
Coordinates	Lat. (^o)	42.4	Long. (^o)	-85.37	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F046034	Metagenome	152	Y
F049206	Metagenome / Metatranscriptome	147	N
F057709	Metagenome	136	Y
F061030	Metagenome / Metatranscriptome	132	Y
F061958	Metagenome / Metatranscriptome	131	N
F068052	Metagenome	125	Y
F082749	Metagenome / Metatranscriptome	113	Y
F083399	Metagenome	113	N

Family

Category

Number of Sequences

3D Structure?

F046034

Metagenome

152

F049206

Metagenome / Metatranscriptome

147

F057709

Metagenome

136

F061030

Metagenome / Metatranscriptome

132

F061958

Metagenome / Metatranscriptome

131

F068052

Metagenome

125

F082749

Metagenome / Metatranscriptome

113

F083399

Metagenome

113

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207573_100140	Not Available	853	Open in IMG/M
Ga0207573_100340	Not Available	693	Open in IMG/M
Ga0207573_100445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	647	Open in IMG/M
Ga0207573_100740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	566	Open in IMG/M
Ga0207573_100826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Rhodoblastus → Rhodoblastus acidophilus	554	Open in IMG/M
Ga0207573_100851	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	549	Open in IMG/M
Ga0207573_100908	Not Available	537	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0207573_100140

Not Available

853

Open in IMG/M

Ga0207573_100340

Not Available

693

Open in IMG/M

Ga0207573_100445

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

647

Open in IMG/M

Ga0207573_100740

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales

566

Open in IMG/M

Ga0207573_100826

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Rhodoblastus → Rhodoblastus acidophilus

554

Open in IMG/M

Ga0207573_100851

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

549

Open in IMG/M

Ga0207573_100908

Not Available

537

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0207573_100049	Ga0207573_1000491	F082749	RLINHAMTLDAGLSLEGVRHDIDPVVSLPARPVPGMALMLVRFINHFEVLRRESLGQLFCDEIGGSHIARLGERSLPVNGYKQVLKASPVKAHNVRS
Ga0207573_100140	Ga0207573_1001402	F057709	MSEFDLKVALIIFVTKFIDPFAAVPALVAGYFCRTWWQVVIAAAAV
Ga0207573_100340	Ga0207573_1003401	F083399	MAEESAVSGDTRSWGFFATFVLGAIAFLAGQLAGMAALVGWYGFDLRNVPVLSQHGGAIIVFIFVSAPVQVAILALAAGYKGNIADYLGYKLPRRGEVVLCLAILAAMIAVGDAMSWLAGRSVVDRFQTDIYQAANSVGQLPLLLAAVVF
Ga0207573_100445	Ga0207573_1004452	F061030	FDKVACTCAVRNGGHVIPPPVGVKREGLKLRPKEEAGGTQTLDGGRVAFPKYYRREGLKFHRSRALEGYLACMRAAGRK
Ga0207573_100740	Ga0207573_1007401	F061958	MAMRHQIWVFAAAMLALICAGLQSEARAQVFDFGQIEEFESLGSGTQKGGSPPKTIIDD
Ga0207573_100826	Ga0207573_1008262	F068052	REWPKLTPAAVTDFERVLASQESHVVSVLPMDRDSIFFARDLVDAFKRIGWKAKRDTSVNDVPDGLTVWPEDDVARAICNALTMATGALVAVREDQHLKDQGTYAIGVGYKLI
Ga0207573_100851	Ga0207573_1008511	F049206	VRTTNEIREELDQAIARRAELWNRLAQGSDAETSAELAGLSKTIDELWGEYRTAEARKRFGSPELIHARARTEERLERDSR
Ga0207573_100908	Ga0207573_1009081	F046034	LCEQALIPFGIEDMSVLVVSVGRNLSVPAYASVAHAA

Scaffold ID

Protein ID

Family

Sequence

Ga0207573_100049

Ga0207573_1000491

F082749

RLINHAMTLDAGLSLEGVRHDIDPVVSLPARPVPGMALMLVRFINHFEVLRRESLGQLFCDEIGGSHIARLGERSLPVNGYKQVLKASPVKAHNVRS

Ga0207573_100140

Ga0207573_1001402

F057709

MSEFDLKVALIIFVTKFIDPFAAVPALVAGYFCRTWWQVVIAAAAV

Ga0207573_100340

Ga0207573_1003401

F083399

MAEESAVSGDTRSWGFFATFVLGAIAFLAGQLAGMAALVGWYGFDLRNVPVLSQHGGAIIVFIFVSAPVQVAILALAAGYKGNIADYLGYKLPRRGEVVLCLAILAAMIAVGDAMSWLAGRSVVDRFQTDIYQAANSVGQLPLLLAAVVF

Ga0207573_100445

Ga0207573_1004452

F061030

FDKVACTCAVRNGGHVIPPPVGVKREGLKLRPKEEAGGTQTLDGGRVAFPKYYRREGLKFHRSRALEGYLACMRAAGRK

Ga0207573_100740

Ga0207573_1007401

F061958

MAMRHQIWVFAAAMLALICAGLQSEARAQVFDFGQIEEFESLGSGTQKGGSPPKTIIDD

Ga0207573_100826

Ga0207573_1008262

F068052

REWPKLTPAAVTDFERVLASQESHVVSVLPMDRDSIFFARDLVDAFKRIGWKAKRDTSVNDVPDGLTVWPEDDVARAICNALTMATGALVAVREDQHLKDQGTYAIGVGYKLI

Ga0207573_100851

Ga0207573_1008511

F049206

VRTTNEIREELDQAIARRAELWNRLAQGSDAETSAELAGLSKTIDELWGEYRTAEARKRFGSPELIHARARTEERLERDSR

Ga0207573_100908

Ga0207573_1009081

F046034

LCEQALIPFGIEDMSVLVVSVGRNLSVPAYASVAHAA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026658: Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G09K4-12 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences