NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026713

3300026713: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO21-D (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026713 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095510 | Gp0091537 | Ga0207629
Sample NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO21-D (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size14624499
Sequencing Scaffolds11
Novel Protein Genes11
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium3
All Organisms → cellular organisms → Bacteria4
Not Available3
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationWisconsin, United States
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000268Metagenome / Metatranscriptome1411Y
F006477Metagenome / Metatranscriptome372Y
F007896Metagenome / Metatranscriptome343Y
F017759Metagenome239N
F018629Metagenome / Metatranscriptome234Y
F022031Metagenome / Metatranscriptome216Y
F042206Metagenome / Metatranscriptome158Y
F046551Metagenome / Metatranscriptome151Y
F049092Metagenome147N
F050719Metagenome / Metatranscriptome145Y
F063553Metagenome129Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207629_100602All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium704Open in IMG/M
Ga0207629_100641All Organisms → cellular organisms → Bacteria695Open in IMG/M
Ga0207629_100729All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium674Open in IMG/M
Ga0207629_100760Not Available667Open in IMG/M
Ga0207629_100816All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium656Open in IMG/M
Ga0207629_101290All Organisms → cellular organisms → Bacteria587Open in IMG/M
Ga0207629_101546All Organisms → cellular organisms → Bacteria564Open in IMG/M
Ga0207629_101575Not Available561Open in IMG/M
Ga0207629_101590All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium560Open in IMG/M
Ga0207629_102080All Organisms → cellular organisms → Bacteria519Open in IMG/M
Ga0207629_102254Not Available509Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207629_100602Ga0207629_1006021F022031MTNFVSTVCLVLMCSAIFLDSSTLTAAQSSSLDGTYVLDQTESDNINDVIEDAVGKLNFVTRDIARERLKKL
Ga0207629_100641Ga0207629_1006412F018629KQGMAGSIPESQAVSEERQKKDAMAELICSVSGWVAEFKGRRRPDPRITFQTLFKEA
Ga0207629_100729Ga0207629_1007291F042206MQIAAQPAFNQSGLALHATAGKIAFAGKMHITAGANASTEPAGDFVIAQINVRAAGWTDCRRRCARNLLFPFTFETLDNATGLPLPKILEFPKDR
Ga0207629_100760Ga0207629_1007601F049092MKFIEPAFETGGDLWRTSSNVPDADARALNEKLARQSAELNRRLTEILELYNVHQRQANELQDAHDEIDRLSQTVSALQEAVTQYQAGAAAAEDEIVLLESEKAALQAQLDGAFEESKTLADRVLAAEAAAKRREENIASSLKQIDFLNAELMAA
Ga0207629_100816Ga0207629_1008161F046551MQSPPINQAEIDARISSHIDELLELWWAEQGPSKPKDLELIALAMPFPRGQAIRALDLCCGPGDVGRAIRQIYPKAQIDCIDRDPFLTSI
Ga0207629_101290Ga0207629_1012901F063553GEMLNGPLALILRFFGLVPLAAISFLIGALISRVGWIAVGKVSGSDPESVFAAERY
Ga0207629_101546Ga0207629_1015461F000268EIDDNLTSNSSWMLMRVVAVMLLLSAGIAAEAVSYSFVSKASGRLGGPIRFEFYRDSTTRPKTDIESFTVSMRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYAGFATDGHGGSSRVTFGFDKNGRMTFPDSFDQ
Ga0207629_101575Ga0207629_1015751F050719MLDPVREECDLHIRAAGIFVMQLELLEIQRLVTLSHNEGPIVAEEPIFATAQTR
Ga0207629_101590Ga0207629_1015901F006477MTVLIPLIVVVASGLAFVAYKHPNAYRVMFMFAVPVLVMGGLIVLAIKIGDLNGSIKSIYHELPNIQKYALSDQLPYQIRRLYDVGQFLKVFLIYYIFGFAYLVFLFVLGALLDLAKDRHDIPT
Ga0207629_102080Ga0207629_1020801F007896SRAGTYLRQNASAFHSDLARRQSYARGFTLRFVERANYLSPKMTTRRAAAVFCFANYESTTISKKALCELQDCEAQERIARDLQKPTAQATPGLNGFNFVTL
Ga0207629_102254Ga0207629_1022541F017759MLSGAVIVHGCKPLLLFGVVVGLLNSECPQQYGAYESKYGAHGQHIELQGKVHGSASLVDARRLARNQRRPKVPAIGPVLFAGEIAYRICAMDNRLIVRLKKSEEPKILTVQNSRGTEFFMANLRQIPSILRAMIPPAWS
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