NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026752

3300026752: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A4w-11 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026752 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095510 | Gp0072066 | Ga0207473
Sample NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A4w-11 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size22181894
Sequencing Scaffolds17
Novel Protein Genes20
Associated Families20

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon1
All Organisms → cellular organisms → Bacteria4
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium2
All Organisms → cellular organisms → Archaea3
Not Available4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationWisconsin, United States
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000982Metagenome / Metatranscriptome814Y
F004285Metagenome / Metatranscriptome445Y
F005189Metagenome / Metatranscriptome409Y
F005683Metagenome / Metatranscriptome393Y
F005950Metagenome / Metatranscriptome385Y
F007819Metagenome / Metatranscriptome344Y
F017514Metagenome / Metatranscriptome240Y
F035451Metagenome / Metatranscriptome172Y
F044132Metagenome / Metatranscriptome155Y
F050726Metagenome145Y
F054450Metagenome / Metatranscriptome140Y
F071512Metagenome / Metatranscriptome122Y
F071715Metagenome122N
F085355Metagenome / Metatranscriptome111Y
F087254Metagenome110N
F087398Metagenome / Metatranscriptome110Y
F087830Metagenome / Metatranscriptome110N
F089374Metagenome / Metatranscriptome109Y
F099534Metagenome103Y
F105318Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207473_100126All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon1341Open in IMG/M
Ga0207473_100148All Organisms → cellular organisms → Bacteria1298Open in IMG/M
Ga0207473_100174All Organisms → Viruses → unclassified viruses → Circular genetic element sp.1239Open in IMG/M
Ga0207473_100971All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium832Open in IMG/M
Ga0207473_101227All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium777Open in IMG/M
Ga0207473_101291All Organisms → cellular organisms → Bacteria767Open in IMG/M
Ga0207473_102096All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium675Open in IMG/M
Ga0207473_102240All Organisms → cellular organisms → Archaea661Open in IMG/M
Ga0207473_102337All Organisms → cellular organisms → Bacteria654Open in IMG/M
Ga0207473_102702Not Available627Open in IMG/M
Ga0207473_102958Not Available608Open in IMG/M
Ga0207473_103104All Organisms → cellular organisms → Archaea600Open in IMG/M
Ga0207473_103556Not Available577Open in IMG/M
Ga0207473_103980All Organisms → cellular organisms → Archaea558Open in IMG/M
Ga0207473_104363Not Available541Open in IMG/M
Ga0207473_104424All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria539Open in IMG/M
Ga0207473_104903All Organisms → cellular organisms → Bacteria521Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207473_100126Ga0207473_1001263F054450MHDSLYGNYPLSNKHRPTPTVRPVNRSKEQLQEFRDIISNPRTSQDSKKRFMVEKGG
Ga0207473_100148Ga0207473_1001482F050726VTLIETDRWTLAEELWSFGEDSLYPVALQLSDEDMVRLWLLAGGLLLKERARSSGEATALAAVAVIEGNQRPLARKRRRPQPNRLRFEQTPEERYAEISRIEDSPSFDEKWR
Ga0207473_100174Ga0207473_1001742F099534MGKLPTGIGMTDVAAMAKAIESMHDCRVELIVRTLGKDVGGRMDIECVGTFDVLPGSDLPKVVSVHMSWPSKAAATFDGLCYNLLWQLDYAVQQAYEQMTIDKK
Ga0207473_100971Ga0207473_1009711F089374MTNILDSARASDEGPRLIVRKASHAPIWSVWAVLEGTPSEEI
Ga0207473_101227Ga0207473_1012271F087398PARIETQFLTPVQLPAKVAIKEWTADGAVRRALCDVRTGRVHMYAWWASD
Ga0207473_101291Ga0207473_1012911F004285MSLSWISNRSMRVSPRARLVDDGAAEALRRKLEAIEWRPQNGFLKDQIVERDE
Ga0207473_101395Ga0207473_1013953F105318SWVMPMEEFIHQQNLERYRKMLSEKTHEPQRQTIVRLLADEENRDDPLSKLDS
Ga0207473_102096Ga0207473_1020961F000982MPIYRSSSRATNLLQHQRTRGRSYPTPRYWERLYQMLEEEAEKRGKTAPPPPLTHGLEHELTEEDRLERLREQVSWADRNNLLHRIQMFF
Ga0207473_102121Ga0207473_1021211F071715MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGVGVGVPVGRGATIGVDGA
Ga0207473_102240Ga0207473_1022401F005950TNGKNRIKVKIHRTSDYDDKYTGIRDFPDEKAMLQYGLSKVHKVIIRKYMKDDEFITRAQKTRGIKFDYEMELYD
Ga0207473_102337Ga0207473_1023371F071512ARYPNHAGARRLMTVSLGLLGRIDEAKESLDHTLTLQPDFSTDHVAYNTVFAHASDRTRFLRGLKRAGLRD
Ga0207473_102702Ga0207473_1027021F035451MTMRKLTLLGVAVVAAAVIGSGTLAWVHNEAAPADHESATSYVVGPDGRLIGAAPNPSIRSQWERNGLPN
Ga0207473_102733Ga0207473_1027331F044132GQGYIDFDKPGAAPDRMAPVNRFGNENGQTTMKQGNSTLQFGGQQSFGQRYNTDNIFNPYARDGR
Ga0207473_102958Ga0207473_1029582F085355MDSLRAALTWIKDLLNWLPEPVVALLILGIAVLLALALHR
Ga0207473_103104Ga0207473_1031041F087254MHSVSGFFLIVTFFIIGVSILAVYTTTLATELGLEKDDLQITSLAHLVKSMDWENDYNEEKIGERILKAQLDNLKITLQGNFTKNNVTEIENNFATYESHLENLEGSVTVNGSLLNLKHKAESE
Ga0207473_103556Ga0207473_1035562F005189VYPVFAQDVDPRCKDIFDKVACTCAVRNGGHVIPPPVGVKREGLKLRPKEEAGGTQTLDGGRVAFPKYYRREGLKFHRSRALEGYLACMRAAGRK
Ga0207473_103980Ga0207473_1039801F005683MEKSNGTKIMGILLVFALVVYSIYFGQISFAEGVELKTVGKGAISCGNGEEVKGVRINFFVSYDEETPFAEWNMDHKELGSAGGMITNVKTSSDSFVLKGFEAFDSICDVETPSDVKLSGNCGEGTV
Ga0207473_104363Ga0207473_1043632F017514MAQGKERTKDELLREAKRLGIKGRSKMNKGALKAAVDRRR
Ga0207473_104424Ga0207473_1044241F007819VSSEDQAVYFNAVPLFVLSGAYLMVAALLAPTLWRERRRVAVTDVALASIFPGIAIPAAIFGAVVLHDRSPIGGHVWPPFVAIVIALIPALIFLRRWSEPAVVVMSGPRAREAEELVSVRDRELDAVAQIVNALARSQDPVEAARTLLDKVESLLGTDFTALALVT
Ga0207473_104903Ga0207473_1049032F087830LPKSQTLRSSLWGLNRARLLTAVIVLAVGALLRITDAFPYAFGPFAIMVLGVAAAGLVLPLADRRGIRPDRIAWFQFSLDALLITGIVTASGG
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