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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026756 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0095510 | Gp0091551 | Ga0207577 |
| Sample Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10K2-12 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 23090149 |
| Sequencing Scaffolds | 13 |
| Novel Protein Genes | 14 |
| Associated Families | 14 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia | 1 |
| Not Available | 6 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 3 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → agricultural field → agricultural soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Wisconsin, United States | |||||||
| Coordinates | Lat. (o) | 43.3 | Long. (o) | -89.38 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004309 | Metagenome / Metatranscriptome | 444 | Y |
| F006812 | Metagenome / Metatranscriptome | 364 | Y |
| F009364 | Metagenome / Metatranscriptome | 319 | Y |
| F017166 | Metagenome / Metatranscriptome | 242 | Y |
| F022740 | Metagenome / Metatranscriptome | 213 | Y |
| F025120 | Metagenome / Metatranscriptome | 203 | Y |
| F025757 | Metagenome | 200 | N |
| F031960 | Metagenome / Metatranscriptome | 181 | Y |
| F038225 | Metagenome / Metatranscriptome | 166 | Y |
| F045966 | Metagenome / Metatranscriptome | 152 | Y |
| F064703 | Metagenome / Metatranscriptome | 128 | Y |
| F069143 | Metagenome / Metatranscriptome | 124 | Y |
| F087728 | Metagenome | 110 | N |
| F088400 | Metagenome / Metatranscriptome | 109 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0207577_100352 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia | 964 | Open in IMG/M |
| Ga0207577_100642 | Not Available | 832 | Open in IMG/M |
| Ga0207577_100858 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 776 | Open in IMG/M |
| Ga0207577_100916 | All Organisms → cellular organisms → Bacteria | 767 | Open in IMG/M |
| Ga0207577_101174 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 732 | Open in IMG/M |
| Ga0207577_101217 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 725 | Open in IMG/M |
| Ga0207577_101239 | Not Available | 723 | Open in IMG/M |
| Ga0207577_101744 | Not Available | 659 | Open in IMG/M |
| Ga0207577_102728 | Not Available | 586 | Open in IMG/M |
| Ga0207577_102789 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 582 | Open in IMG/M |
| Ga0207577_103262 | Not Available | 559 | Open in IMG/M |
| Ga0207577_103445 | Not Available | 549 | Open in IMG/M |
| Ga0207577_103580 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 544 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0207577_100352 | Ga0207577_1003521 | F087728 | VAMIERAPEATSWFGRIGYALTRSTDLVRVEFLHVLGVCAALVLIYALLGPLLAVLLTGFADNGSLAASVIANGVLGPFFFLGLSMLYFEQRARELSSPPKPKT |
| Ga0207577_100642 | Ga0207577_1006421 | F064703 | MRKSLTVLIVALLGVFAVKSIIGPGKMNLGESVKYPVPTYDLHVAQPVDMKNFPSDVIP |
| Ga0207577_100858 | Ga0207577_1008581 | F009364 | VLDRPERLERVELALVVLAGCGAASDQTQEQTLTPAQVRQTFKQVTGRPLEPAAVSDPAWDQLGFGLDMPQSLVDRYGIFNVYVGKPGKTASLASFFKDKDTEKPLARSSDGVYWELDSQSKTWVAYKRYSGNVVLVWLSGSKEQAADERFDRLDSILSGLPG |
| Ga0207577_100916 | Ga0207577_1009162 | F038225 | MKRLSLALLGAVGAFFVLTPAQAADYRVIQYNDTKICQVVDMAGPFKPISSNYTVLTKKSIPTFDAAMKARAEVGAKAKCIL |
| Ga0207577_101174 | Ga0207577_1011742 | F045966 | DIMSQAAPMAIERTYNNRYIFSNRVNPQSLVYQGIYQDFDWASIALK |
| Ga0207577_101217 | Ga0207577_1012173 | F031960 | QTLIADPDAPDADSFKNKDYEFYALKTFITLTRKSHGVVVKTYNACWVE |
| Ga0207577_101239 | Ga0207577_1012391 | F006812 | MYVLLIILLVVLPFGTAIVCGALMQWAGNTISGWSSIGGLALGIYFFHKCMEVLAAA |
| Ga0207577_101744 | Ga0207577_1017442 | F025757 | LALSATRAPMSYSASLSLFWLEMAVLIGCVVLSIRMRSRAAMWVALAIVAHCAVWLAIHDEEILIRLVASALVYLGLLKFSPNAARVWLCAGGALAGAFLLGTMALSLLMSFPGRWSVFGLSMGATLLFLTSGLLIGFWVVYRWTDPTQLGDTQPRQEA |
| Ga0207577_102224 | Ga0207577_1022242 | F088400 | MRTLSSLLGRKIVTESGSDLGRCHDVRAELGASRLRITGLVLGSRGHLEHFGIGAQASASSARVRDSDLIPWKDIVGFEADRILVRDSAVGE |
| Ga0207577_102728 | Ga0207577_1027282 | F004309 | MAYSIVRVDEIEGSGPGGAVHFVRRELGVGAFGINWFELPPDTEGFEHDESETQQEEVNVIIRGSGVYRIEGQEIPVG |
| Ga0207577_102789 | Ga0207577_1027891 | F069143 | VSALELARAALAAVDGDAEAVAHSEQSGLARFAGSE |
| Ga0207577_103262 | Ga0207577_1032621 | F017166 | AMLFIGWLYLGEMSDVRSIKAAVTAAADSTAVALSQSANPERNTDADADGIFIKHIQTSSTLEDVSVKQSVEPISAGRLRQSVKVTARARTTLSEFFNMQGAEIDITATHDFDRKK |
| Ga0207577_103445 | Ga0207577_1034451 | F022740 | AENTVIFVDKAAGAGSRNVGFYHRRRAQILAARSNELGGLVSFISVGGQPVNTTRNGTIVAAFTFDDIVWTDIQQKTFAAATAQIRQIRPGSTPVLAATGTITPLADTEIRKLGWKIVQLKPDR |
| Ga0207577_103580 | Ga0207577_1035802 | F025120 | MGVALPLTLFYLLALQTLSQLFTIAVSTFLTWGVTDFLANILHRPRLQNRTPGGAIREDWERRQKDS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |