Sample 3300026798

Overview

Basic Information
IMG/M Taxon OID	3300026798 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095510 \| Gp0091575 \| Ga0207515
Sample Name	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A3-12 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	17679026
Sequencing Scaffolds	5
Novel Protein Genes	5
Associated Families	5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Wisconsin, United States
Coordinates	Lat. (^o)	43.3	Long. (^o)	-89.38	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F004992	Metagenome / Metatranscriptome	416	Y
F026346	Metagenome / Metatranscriptome	198	Y
F045732	Metagenome / Metatranscriptome	152	N
F084203	Metagenome / Metatranscriptome	112	N
F085515	Metagenome	111	Y

Family

Category

Number of Sequences

3D Structure?

F004992

Metagenome / Metatranscriptome

416

F026346

Metagenome / Metatranscriptome

198

F045732

Metagenome / Metatranscriptome

152

F084203

Metagenome / Metatranscriptome

112

F085515

Metagenome

111

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207515_100137	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	859	Open in IMG/M
Ga0207515_101206	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	574	Open in IMG/M
Ga0207515_101403	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	554	Open in IMG/M
Ga0207515_101480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	548	Open in IMG/M
Ga0207515_102077	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	510	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0207515_100137

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

859

Open in IMG/M

Ga0207515_101206

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462

574

Open in IMG/M

Ga0207515_101403

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

554

Open in IMG/M

Ga0207515_101480

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae

548

Open in IMG/M

Ga0207515_102077

All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium

510

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0207515_100137	Ga0207515_1001373	F045732	CVCAGHVVCNMRHRRRRVFIDTQKGRVSAGFTVAAEADAADVSMRLRERGWIAYRLRLEAEQYAWIATVIDWARRAA
Ga0207515_101206	Ga0207515_1012061	F084203	MRARIRRALWMFGALAFVAMPASAQESTEVAPLTTEDSALLANALVFDPGALATAPKKPLRLPGYRNNEYDITRTQKVDGSTTVVVKQPVQTEWSNSVGADLAPSKPTAYPLPLSTERNNGMPAGAAWASVGVPNLASVDARVDPTNEQGKV
Ga0207515_101403	Ga0207515_1014032	F004992	MSNETPAAIDPDMFAAVFSENWDNARYIKSERISFMNAYSVICAGVLALLQSVQASDLIRIALLFFMTLFSLVGLLTSLRLKSELEECLAKIEAMTVQAKVSHFVALGQLEGRPSRYPRFRWIFPIFYTMTTAGFI
Ga0207515_101480	Ga0207515_1014801	F026346	PPTEGGEAASRVASIVVETDKKGRCEERRFDNRTGKMVSANYVNCDARLEPERDTTPSENINRERIRAILGAFKK
Ga0207515_102077	Ga0207515_1020771	F085515	QQLYRQSEARLEQANRTLGQAVFERLLLLDATLKSIPPNAVLQLAAAKRIPRVAPPVRRPRPKLGNQTQAGSLDGRVAMGGIIIDRTARLSAKRSRTDLIEASKALIAGLDLLARQRFAAVEFVGDDNKSIEVFGRLSRRPRLSARDSSDLRLGLPLVSVVHFGGGPRVY

Scaffold ID

Protein ID

Family

Sequence

Ga0207515_100137

Ga0207515_1001373

F045732

CVCAGHVVCNMRHRRRRVFIDTQKGRVSAGFTVAAEADAADVSMRLRERGWIAYRLRLEAEQYAWIATVIDWARRAA

Ga0207515_101206

Ga0207515_1012061

F084203

MRARIRRALWMFGALAFVAMPASAQESTEVAPLTTEDSALLANALVFDPGALATAPKKPLRLPGYRNNEYDITRTQKVDGSTTVVVKQPVQTEWSNSVGADLAPSKPTAYPLPLSTERNNGMPAGAAWASVGVPNLASVDARVDPTNEQGKV

Ga0207515_101403

Ga0207515_1014032

F004992

MSNETPAAIDPDMFAAVFSENWDNARYIKSERISFMNAYSVICAGVLALLQSVQASDLIRIALLFFMTLFSLVGLLTSLRLKSELEECLAKIEAMTVQAKVSHFVALGQLEGRPSRYPRFRWIFPIFYTMTTAGFI

Ga0207515_101480

Ga0207515_1014801

F026346

PPTEGGEAASRVASIVVETDKKGRCEERRFDNRTGKMVSANYVNCDARLEPERDTTPSENINRERIRAILGAFKK

Ga0207515_102077

Ga0207515_1020771

F085515

QQLYRQSEARLEQANRTLGQAVFERLLLLDATLKSIPPNAVLQLAAAKRIPRVAPPVRRPRPKLGNQTQAGSLDGRVAMGGIIIDRTARLSAKRSRTDLIEASKALIAGLDLLARQRFAAVEFVGDDNKSIEVFGRLSRRPRLSARDSSDLRLGLPLVSVVHFGGGPRVY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026798: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A3-12 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences