NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026815

3300026815: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A4w-12 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026815 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0095510 | Gp0072095 | Ga0207442
Sample NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A4w-12 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size32121306
Sequencing Scaffolds24
Novel Protein Genes24
Associated Families24

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea5
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2
Not Available10
All Organisms → cellular organisms → Bacteria → Terrabacteria group1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Chitinophaga → unclassified Chitinophaga → Chitinophaga sp. YR6271
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root14621

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biomeagricultural fieldagricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationWisconsin, United States
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000982Metagenome / Metatranscriptome814Y
F001196Metagenome / Metatranscriptome749Y
F002315Metagenome / Metatranscriptome572Y
F006430Metagenome / Metatranscriptome373Y
F013893Metagenome / Metatranscriptome267Y
F015863Metagenome / Metatranscriptome251Y
F016471Metagenome / Metatranscriptome247Y
F019548Metagenome / Metatranscriptome229N
F020931Metagenome / Metatranscriptome221Y
F022904Metagenome212Y
F023901Metagenome / Metatranscriptome208N
F025317Metagenome / Metatranscriptome202Y
F027560Metagenome / Metatranscriptome194Y
F033457Metagenome / Metatranscriptome177Y
F056396Metagenome137N
F062531Metagenome130N
F062737Metagenome / Metatranscriptome130Y
F063830Metagenome129Y
F063850Metagenome129N
F068551Metagenome124N
F083875Metagenome / Metatranscriptome112N
F096007Metagenome105Y
F099772Metagenome / Metatranscriptome103N
F103533Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207442_100053All Organisms → cellular organisms → Archaea2090Open in IMG/M
Ga0207442_100190All Organisms → cellular organisms → Archaea1589Open in IMG/M
Ga0207442_100458All Organisms → cellular organisms → Bacteria1276Open in IMG/M
Ga0207442_100480All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1260Open in IMG/M
Ga0207442_101128Not Available990Open in IMG/M
Ga0207442_101455All Organisms → cellular organisms → Archaea917Open in IMG/M
Ga0207442_101458Not Available917Open in IMG/M
Ga0207442_101474Not Available913Open in IMG/M
Ga0207442_102270Not Available796Open in IMG/M
Ga0207442_102731All Organisms → cellular organisms → Bacteria → Terrabacteria group751Open in IMG/M
Ga0207442_102981All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium729Open in IMG/M
Ga0207442_103157Not Available715Open in IMG/M
Ga0207442_104017All Organisms → cellular organisms → Archaea656Open in IMG/M
Ga0207442_104585Not Available624Open in IMG/M
Ga0207442_105149All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria599Open in IMG/M
Ga0207442_105515All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium585Open in IMG/M
Ga0207442_105878All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Chitinophaga → unclassified Chitinophaga → Chitinophaga sp. YR627573Open in IMG/M
Ga0207442_105903Not Available572Open in IMG/M
Ga0207442_105948Not Available570Open in IMG/M
Ga0207442_106003All Organisms → cellular organisms → Archaea568Open in IMG/M
Ga0207442_106217All Organisms → cellular organisms → Bacteria → Proteobacteria562Open in IMG/M
Ga0207442_106394Not Available556Open in IMG/M
Ga0207442_107397Not Available529Open in IMG/M
Ga0207442_107881All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462517Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207442_100053Ga0207442_1000531F068551MQLGVIVIFIFVILGIVFFIVFGIGYFKTENPQTENLQNRSTVVFPNADSIPPECKYNPNDLLCQFQLEKQKMKLSQNE
Ga0207442_100190Ga0207442_1001901F062531TKSIFAITKAPDDLVFPLFIAGPFMTGYLKYKGVLESADRLTFGHSNYGYRYFLNLSSPSKLLDSSSGLIPKNEFLSKIPEGYDVPFKGMLILTQKHNELYAIIFLNPKEKFDSMLNQIQPTLDSIQLSG
Ga0207442_100458Ga0207442_1004584F103533MATPEPAPVSNWWAAQVHEIAWAAVQGGGGEHADLEWLPAVVEARLAHRVDLLERAGATEEELAAAGDELVEWAIGLLRKEPPPRRTL
Ga0207442_100480Ga0207442_1004802F013893MHHGHRRFRGHRRGVGHRFYEPERVLERLEEYQRDLEQELADVTELIKRIRADAPQPQPQSA
Ga0207442_101128Ga0207442_1011282F001196MSWLDTRLALAALAMLAAESATAGAVVDQFKGGAFGLPWNAGRSTIEAKYAGGRWDQDDQGRQRYCAKSQQSLLKLAAQYKTRELCFLVGADGTLASATARFEPTLPSLLAVVNRSRTIFGDFDSIKRDEGSVQSRYTYMMWTRDRPYLVQVGSTNDANGRPNEVTFTVADDAALHTGGADAVSHRPVAQNH
Ga0207442_101455Ga0207442_1014552F023901LKMRSTHNEQGQTCEGGVPLDPNKFGGYEFAINTKGWDAKREPTHNRHDQHKSGLIPTNLENDKAVRLRQTVKDESGKVHQIGEIDYMDGNGFHKVMDIFDSSPNPWMVDRNLYETKSYFWIRNNGSGYITVRDVSLEILS
Ga0207442_101458Ga0207442_1014582F062737MQVVHTAALPPNHGRICLAMIGWTRNSRKDERKIVAA
Ga0207442_101474Ga0207442_1014741F063830MRTALVTASVLGLALIGGTSARSDQSRSHADFQGYWMGVDPVDGGDARRSLILRSDGKYALAARDSMLTLCDSTDRGFASFDDGSVVSRTVMQSNSLIIECFNNGAMVQLHLRFELVERGLMIETATLPDGSPVSTIVLHKVSTN
Ga0207442_102270Ga0207442_1022701F083875MKGIFRAACLAILIAPAISAAQEYGCDKVNWGEEVLKAFPNASKGCHSVMMKNNQPYAKYVAEVESVDKSTKEVTLHMLDTKDKAFSKVVIAPKEGASVKIDGKDTPVAKLKKGDRVSFYVQHKKWGLYANPDGTAPLTVLSREQM
Ga0207442_102731Ga0207442_1027312F096007MADLAPTASPHVLAASTSAAAGESRWRVIARTAFPFLVVAL
Ga0207442_102981Ga0207442_1029811F000982MPIYRSSSRATNLLQHQRTRGRSYPTPRYWERLYQMLEEEAEKRGKTAPPPPLTHGLEHELTEEDRLERLREQVSWADRNNLLHRIQMFFESMPPSAWEKLS
Ga0207442_103157Ga0207442_1031571F022904MELTRTDSVPKGDTLSAYDFAMEEVTGASSRLADALLARTQERADATTTEQECSNARSVYERMIHLFPRVRLDATQRASLLKELGLLRSRLEECKADERKSQLTRPWVW
Ga0207442_104017Ga0207442_1040171F020931LSPRFGFFKRKTPDYFHNKESEANSVHSVSNKELLEIVEKKKKVLEKDLIDNLEPTRNLVLDCLNRLRKNADELEEQEIKAESPQFESLINTSKKILITSIKKESLIESYQIKSYEDAIKFKNNLELLINRFGQVGDSHNRILNEFMRKQINKLKSEFDNLSSLLKTVTKIISTKENQINSCIQCKADLILLDEKMNERRTK
Ga0207442_104585Ga0207442_1045851F019548MDPSKKETYKILERFTSQKGGILFILHKSFSSDSKPPEEQTSVVRDDERKSAIFEINFGTVAGLSMLFECEKALADQVMSLDFLDSGIEGDVIWFGGMLDKSGSEFIGSTYDDGLKSAPVEQSELVHRVNQAIDKCLEYMLNSVELDKNVYVDASNRMS
Ga0207442_105149Ga0207442_1051492F025317MARVRERLAVLAFAALIVVAIIGLAFALGYGVGKLLL
Ga0207442_105515Ga0207442_1055152F006430PDKGFHAQLPSKQVALKNADGVTVKTFGQLDPQIRADIKTFIGTAVARKNLGRSWAVVSPTLKRDYTQASWAKGSDLPVVPYPGVDTKRIQYFLDYASTKEILIEVGLAGKKGVSTRPVTFQLGLVRGEGSSHPWLVDYWMPRWTPPVPSGQ
Ga0207442_105878Ga0207442_1058781F056396DFDNKAKKIFFSLYEKFAESAKQLDRKKDDNVFQQQQSKYLNTLKTHLENLAQELLNKKSSLKNINLLNKKLRDEINIYLNEFRQKSRSL
Ga0207442_105903Ga0207442_1059032F099772SPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRTDFAFDWFRPPALP
Ga0207442_105948Ga0207442_1059481F002315VAVLSMAMLATVTFAADKKTYRYTCKGGAFTVTAAVEASGRWSKAEPVVLQIGSEPLQTLTADPDAPDADSFSNKDYEFYALKAFITLTRKSHGVVVKTYNACRAE
Ga0207442_106003Ga0207442_1060031F016471MTEADKFGAVKDATVAIGLANKDTKDVISSFGTGFFIGGEYIVSSAHIFSQCIKYNAQNKDMNNGMEGIYSAFNITTNGDQLELNTYHIIKAIRLPPVKEVTGFTGSVDLDIGIGKLDRH
Ga0207442_106217Ga0207442_1062171F033457MSYVLASAFVVLLLAVVTPPGFGVAARPSIEGQRLAPQIVDRTRKSDQLPVPKATGRRLTPPAAPVLVGCDPVFSALSKDKQANYPGRCLA
Ga0207442_106394Ga0207442_1063941F015863MRRFIPLLILLGLVFGASYASALINRVMGPWSSTAIHQDGSLSHMQFGVDLPRPEWVPVYPGAWVVGGSKITSVEHPAGFHGLDLGTRASLDEVKRFYTEQLTAAGFEVSDLGLMGLNPMTAAYLGVDGMLSAKRHATDDAIDVQIRTPDG
Ga0207442_107397Ga0207442_1073971F027560AMKAMADYGRTKSVKVSFETRGVGTPEYVQAIGMKPWEFGLTVFRDAGANSNVDIGNVGAMNQQELHDCIKAWFPYSSGNMHVKSSPFWDIGQAVKFTEGLGYKGLYAIEVARHEGVRIVYNTILANLA
Ga0207442_107881Ga0207442_1078811F063850MRLVAVIGVVVLVALPGMANAASVEQVFQEFGLFGMWATDCSSPATPGNPHVNITAPSAGLVLEDHDLGPDFAVNRYSVLSAEPVSQTNVSVQVIFQPGTTVEERQKLVFSVNNNTRRTIFNQSDAGAIRVKDGIAV

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