Basic Information | |
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IMG/M Taxon OID | 3300026815 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0095510 | Gp0072095 | Ga0207442 |
Sample Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A4w-12 (SPAdes) |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 32121306 |
Sequencing Scaffolds | 24 |
Novel Protein Genes | 24 |
Associated Families | 24 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Archaea | 5 |
All Organisms → cellular organisms → Bacteria | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 2 |
Not Available | 10 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Chitinophaga → unclassified Chitinophaga → Chitinophaga sp. YR627 | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462 | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
Type | Environmental |
Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | terrestrial biome → agricultural field → agricultural soil |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
Location Information | ||||||||
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Location | Wisconsin, United States | |||||||
Coordinates | Lat. (o) | 43.3 | Long. (o) | -89.38 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000982 | Metagenome / Metatranscriptome | 814 | Y |
F001196 | Metagenome / Metatranscriptome | 749 | Y |
F002315 | Metagenome / Metatranscriptome | 572 | Y |
F006430 | Metagenome / Metatranscriptome | 373 | Y |
F013893 | Metagenome / Metatranscriptome | 267 | Y |
F015863 | Metagenome / Metatranscriptome | 251 | Y |
F016471 | Metagenome / Metatranscriptome | 247 | Y |
F019548 | Metagenome / Metatranscriptome | 229 | N |
F020931 | Metagenome / Metatranscriptome | 221 | Y |
F022904 | Metagenome | 212 | Y |
F023901 | Metagenome / Metatranscriptome | 208 | N |
F025317 | Metagenome / Metatranscriptome | 202 | Y |
F027560 | Metagenome / Metatranscriptome | 194 | Y |
F033457 | Metagenome / Metatranscriptome | 177 | Y |
F056396 | Metagenome | 137 | N |
F062531 | Metagenome | 130 | N |
F062737 | Metagenome / Metatranscriptome | 130 | Y |
F063830 | Metagenome | 129 | Y |
F063850 | Metagenome | 129 | N |
F068551 | Metagenome | 124 | N |
F083875 | Metagenome / Metatranscriptome | 112 | N |
F096007 | Metagenome | 105 | Y |
F099772 | Metagenome / Metatranscriptome | 103 | N |
F103533 | Metagenome | 101 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0207442_100053 | All Organisms → cellular organisms → Archaea | 2090 | Open in IMG/M |
Ga0207442_100190 | All Organisms → cellular organisms → Archaea | 1589 | Open in IMG/M |
Ga0207442_100458 | All Organisms → cellular organisms → Bacteria | 1276 | Open in IMG/M |
Ga0207442_100480 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1260 | Open in IMG/M |
Ga0207442_101128 | Not Available | 990 | Open in IMG/M |
Ga0207442_101455 | All Organisms → cellular organisms → Archaea | 917 | Open in IMG/M |
Ga0207442_101458 | Not Available | 917 | Open in IMG/M |
Ga0207442_101474 | Not Available | 913 | Open in IMG/M |
Ga0207442_102270 | Not Available | 796 | Open in IMG/M |
Ga0207442_102731 | All Organisms → cellular organisms → Bacteria → Terrabacteria group | 751 | Open in IMG/M |
Ga0207442_102981 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium | 729 | Open in IMG/M |
Ga0207442_103157 | Not Available | 715 | Open in IMG/M |
Ga0207442_104017 | All Organisms → cellular organisms → Archaea | 656 | Open in IMG/M |
Ga0207442_104585 | Not Available | 624 | Open in IMG/M |
Ga0207442_105149 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 599 | Open in IMG/M |
Ga0207442_105515 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 585 | Open in IMG/M |
Ga0207442_105878 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Chitinophaga → unclassified Chitinophaga → Chitinophaga sp. YR627 | 573 | Open in IMG/M |
Ga0207442_105903 | Not Available | 572 | Open in IMG/M |
Ga0207442_105948 | Not Available | 570 | Open in IMG/M |
Ga0207442_106003 | All Organisms → cellular organisms → Archaea | 568 | Open in IMG/M |
Ga0207442_106217 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 562 | Open in IMG/M |
Ga0207442_106394 | Not Available | 556 | Open in IMG/M |
Ga0207442_107397 | Not Available | 529 | Open in IMG/M |
Ga0207442_107881 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462 | 517 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0207442_100053 | Ga0207442_1000531 | F068551 | MQLGVIVIFIFVILGIVFFIVFGIGYFKTENPQTENLQNRSTVVFPNADSIPPECKYNPNDLLCQFQLEKQKMKLSQNE |
Ga0207442_100190 | Ga0207442_1001901 | F062531 | TKSIFAITKAPDDLVFPLFIAGPFMTGYLKYKGVLESADRLTFGHSNYGYRYFLNLSSPSKLLDSSSGLIPKNEFLSKIPEGYDVPFKGMLILTQKHNELYAIIFLNPKEKFDSMLNQIQPTLDSIQLSG |
Ga0207442_100458 | Ga0207442_1004584 | F103533 | MATPEPAPVSNWWAAQVHEIAWAAVQGGGGEHADLEWLPAVVEARLAHRVDLLERAGATEEELAAAGDELVEWAIGLLRKEPPPRRTL |
Ga0207442_100480 | Ga0207442_1004802 | F013893 | MHHGHRRFRGHRRGVGHRFYEPERVLERLEEYQRDLEQELADVTELIKRIRADAPQPQPQSA |
Ga0207442_101128 | Ga0207442_1011282 | F001196 | MSWLDTRLALAALAMLAAESATAGAVVDQFKGGAFGLPWNAGRSTIEAKYAGGRWDQDDQGRQRYCAKSQQSLLKLAAQYKTRELCFLVGADGTLASATARFEPTLPSLLAVVNRSRTIFGDFDSIKRDEGSVQSRYTYMMWTRDRPYLVQVGSTNDANGRPNEVTFTVADDAALHTGGADAVSHRPVAQNH |
Ga0207442_101455 | Ga0207442_1014552 | F023901 | LKMRSTHNEQGQTCEGGVPLDPNKFGGYEFAINTKGWDAKREPTHNRHDQHKSGLIPTNLENDKAVRLRQTVKDESGKVHQIGEIDYMDGNGFHKVMDIFDSSPNPWMVDRNLYETKSYFWIRNNGSGYITVRDVSLEILS |
Ga0207442_101458 | Ga0207442_1014582 | F062737 | MQVVHTAALPPNHGRICLAMIGWTRNSRKDERKIVAA |
Ga0207442_101474 | Ga0207442_1014741 | F063830 | MRTALVTASVLGLALIGGTSARSDQSRSHADFQGYWMGVDPVDGGDARRSLILRSDGKYALAARDSMLTLCDSTDRGFASFDDGSVVSRTVMQSNSLIIECFNNGAMVQLHLRFELVERGLMIETATLPDGSPVSTIVLHKVSTN |
Ga0207442_102270 | Ga0207442_1022701 | F083875 | MKGIFRAACLAILIAPAISAAQEYGCDKVNWGEEVLKAFPNASKGCHSVMMKNNQPYAKYVAEVESVDKSTKEVTLHMLDTKDKAFSKVVIAPKEGASVKIDGKDTPVAKLKKGDRVSFYVQHKKWGLYANPDGTAPLTVLSREQM |
Ga0207442_102731 | Ga0207442_1027312 | F096007 | MADLAPTASPHVLAASTSAAAGESRWRVIARTAFPFLVVAL |
Ga0207442_102981 | Ga0207442_1029811 | F000982 | MPIYRSSSRATNLLQHQRTRGRSYPTPRYWERLYQMLEEEAEKRGKTAPPPPLTHGLEHELTEEDRLERLREQVSWADRNNLLHRIQMFFESMPPSAWEKLS |
Ga0207442_103157 | Ga0207442_1031571 | F022904 | MELTRTDSVPKGDTLSAYDFAMEEVTGASSRLADALLARTQERADATTTEQECSNARSVYERMIHLFPRVRLDATQRASLLKELGLLRSRLEECKADERKSQLTRPWVW |
Ga0207442_104017 | Ga0207442_1040171 | F020931 | LSPRFGFFKRKTPDYFHNKESEANSVHSVSNKELLEIVEKKKKVLEKDLIDNLEPTRNLVLDCLNRLRKNADELEEQEIKAESPQFESLINTSKKILITSIKKESLIESYQIKSYEDAIKFKNNLELLINRFGQVGDSHNRILNEFMRKQINKLKSEFDNLSSLLKTVTKIISTKENQINSCIQCKADLILLDEKMNERRTK |
Ga0207442_104585 | Ga0207442_1045851 | F019548 | MDPSKKETYKILERFTSQKGGILFILHKSFSSDSKPPEEQTSVVRDDERKSAIFEINFGTVAGLSMLFECEKALADQVMSLDFLDSGIEGDVIWFGGMLDKSGSEFIGSTYDDGLKSAPVEQSELVHRVNQAIDKCLEYMLNSVELDKNVYVDASNRMS |
Ga0207442_105149 | Ga0207442_1051492 | F025317 | MARVRERLAVLAFAALIVVAIIGLAFALGYGVGKLLL |
Ga0207442_105515 | Ga0207442_1055152 | F006430 | PDKGFHAQLPSKQVALKNADGVTVKTFGQLDPQIRADIKTFIGTAVARKNLGRSWAVVSPTLKRDYTQASWAKGSDLPVVPYPGVDTKRIQYFLDYASTKEILIEVGLAGKKGVSTRPVTFQLGLVRGEGSSHPWLVDYWMPRWTPPVPSGQ |
Ga0207442_105878 | Ga0207442_1058781 | F056396 | DFDNKAKKIFFSLYEKFAESAKQLDRKKDDNVFQQQQSKYLNTLKTHLENLAQELLNKKSSLKNINLLNKKLRDEINIYLNEFRQKSRSL |
Ga0207442_105903 | Ga0207442_1059032 | F099772 | SPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRTDFAFDWFRPPALP |
Ga0207442_105948 | Ga0207442_1059481 | F002315 | VAVLSMAMLATVTFAADKKTYRYTCKGGAFTVTAAVEASGRWSKAEPVVLQIGSEPLQTLTADPDAPDADSFSNKDYEFYALKAFITLTRKSHGVVVKTYNACRAE |
Ga0207442_106003 | Ga0207442_1060031 | F016471 | MTEADKFGAVKDATVAIGLANKDTKDVISSFGTGFFIGGEYIVSSAHIFSQCIKYNAQNKDMNNGMEGIYSAFNITTNGDQLELNTYHIIKAIRLPPVKEVTGFTGSVDLDIGIGKLDRH |
Ga0207442_106217 | Ga0207442_1062171 | F033457 | MSYVLASAFVVLLLAVVTPPGFGVAARPSIEGQRLAPQIVDRTRKSDQLPVPKATGRRLTPPAAPVLVGCDPVFSALSKDKQANYPGRCLA |
Ga0207442_106394 | Ga0207442_1063941 | F015863 | MRRFIPLLILLGLVFGASYASALINRVMGPWSSTAIHQDGSLSHMQFGVDLPRPEWVPVYPGAWVVGGSKITSVEHPAGFHGLDLGTRASLDEVKRFYTEQLTAAGFEVSDLGLMGLNPMTAAYLGVDGMLSAKRHATDDAIDVQIRTPDG |
Ga0207442_107397 | Ga0207442_1073971 | F027560 | AMKAMADYGRTKSVKVSFETRGVGTPEYVQAIGMKPWEFGLTVFRDAGANSNVDIGNVGAMNQQELHDCIKAWFPYSSGNMHVKSSPFWDIGQAVKFTEGLGYKGLYAIEVARHEGVRIVYNTILANLA |
Ga0207442_107881 | Ga0207442_1078811 | F063850 | MRLVAVIGVVVLVALPGMANAASVEQVFQEFGLFGMWATDCSSPATPGNPHVNITAPSAGLVLEDHDLGPDFAVNRYSVLSAEPVSQTNVSVQVIFQPGTTVEERQKLVFSVNNNTRRTIFNQSDAGAIRVKDGIAV |
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