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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300027274 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114432 | Gp0296243 | Ga0256794 |
| Sample Name | Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0945-MT (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 255228597 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 8 |
| Associated Families | 6 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 5 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia | 1 |
| All Organisms → cellular organisms → Eukaryota | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → research facility → soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Iowa | |||||||
| Coordinates | Lat. (o) | 42.0 | Long. (o) | -93.0 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F028375 | Metagenome / Metatranscriptome | 191 | Y |
| F034478 | Metagenome / Metatranscriptome | 174 | Y |
| F070742 | Metagenome / Metatranscriptome | 122 | Y |
| F071833 | Metagenome / Metatranscriptome | 121 | Y |
| F089626 | Metagenome / Metatranscriptome | 108 | Y |
| F096377 | Metagenome / Metatranscriptome | 104 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0256794_1047639 | Not Available | 1169 | Open in IMG/M |
| Ga0256794_1080933 | Not Available | 848 | Open in IMG/M |
| Ga0256794_1085185 | Not Available | 820 | Open in IMG/M |
| Ga0256794_1106140 | Not Available | 707 | Open in IMG/M |
| Ga0256794_1132596 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia | 603 | Open in IMG/M |
| Ga0256794_1158302 | All Organisms → cellular organisms → Eukaryota | 530 | Open in IMG/M |
| Ga0256794_1160486 | Not Available | 524 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0256794_1047639 | Ga0256794_10476391 | F034478 | RNRPTILRKVVLYGQPQEGKNSFDHREEAEPVGNFLYSSKMEIEQNTLHRNRPTILRKVVLYGQPQEGKNSFDHREEAEPVGNFLSQCRIDSISLWFLRTDNQNVALQGICSSYKKLNEDNFFESFESVDDKIKNSDRDYDIVHFDDGEYIKAINITEASANGKIGAIEFVTTNKGRKVLAYGSANANAEEGKQAEPLPPGETKTFDFLKSEGENFPGYVVGFFGQYDENHITYLGVYVAPLTEVNYYARRAYILTYKKLQQDKNLINDIAKKLGVEKEGERFKDANLEDADNNSSRIFLYFLDASLNHPELFKAVLEYL |
| Ga0256794_1080933 | Ga0256794_10809331 | F028375 | MDISAQCEQWLASHPKINWRSTFNFLLTPEAAKAIEFNDYGIACFAKGLQLELNDKNYQEAFNCYENGAMQLDSLCLFRLHEIYAGDASFNVEYNERQSMCHLLYSALISQFETFDTKVSFWQKLESFWKKDSQRKDYLLDLLTNPPTDYLVATGPLFAKLFNFYNNKETFTEILPELKSLCSDVLKNKFFSILNAIFDFLAYTYNSAFSKVDLEKYVETILDMLTNDILFDNFFQNYVAHLRLVRAKNKFAAAFQRRLETDCFWIWSFS |
| Ga0256794_1085185 | Ga0256794_10851851 | F071833 | KKTHISIMNFSSEFTQDPQQNINLVQILIKRKLIEPFEKLSRESVECYNLQKGTKEANNEYATRVNKCLDSWQKHFESVEDHTNKYLSNLRAKEALHFSKLFHCSNAINDKDVEACRKEENHRFATELKETFSQL |
| Ga0256794_1106140 | Ga0256794_11061402 | F089626 | VVVDNLDVRTIVSDLAFFLKSGVISLGELGEAILAGDDDLLSTGELEFTSSESFNSVGDVLFSKSDGVEDLVDLDSGDLTGGFTEGVSHTSLKSIGTSA |
| Ga0256794_1110467 | Ga0256794_11104671 | F028375 | KGFQKEFIDRDYIEALNWYETGAMQYDSICLFRLHEIYIGDTHFKVPYDERQALCHLIYSALLSQFEIFDTKVSFWQKFEAFWKKESSKTAYIQELLISPSADYFVATGGLFSKLFTFYATKNNFPEILPELKNLSTDILKTKFFSIINAMFDFLAYTYNSGFSKVDLQKYVDTILDMLTNDILFDNFFQNYITHIKLLKAKKKFAHVFQRRLETDCFWVWSFSFLVS |
| Ga0256794_1132596 | Ga0256794_11325961 | F070742 | EKSLKDKVGNPCWRTNLFFPQNLILSLGKTTNVTYIYFENFENGCELEISVSETETGPYIPAVRKKFFPRSSLRRVKVGSLPCKFLKIVVHKGVTINPKSIHLFGFYAEDTEDIFGDGLFEVLVTNSQRLIYQ |
| Ga0256794_1158302 | Ga0256794_11583021 | F096377 | YLKINNNSDLVQFQSKYKSTPLYFIPTDDNNVNIFITDNDAIINDILGQEDIIEDVVSKLFAKLDRNPTPFQEDLWLPIFSIKEKTIDLEAAKTLLKDEYKVNYATNTCTIGLNGSRVPGNLKVRPNEKSKIIEKPFLFGILHEQVDFPLFAVVVKPEDFAQHE |
| Ga0256794_1160486 | Ga0256794_11604861 | F071833 | IEPFEKLSKENVECYNLERGTLEGKPQYFERVNKCLDSWQRHFERVESNTNQYLSKLREKEASHFSKLFHCSNAINDPEIQACRKEENERFANELKDTFSQL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |