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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300027369 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114432 | Gp0296244 | Ga0256795 |
| Sample Name | Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0946-MT (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 261806712 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 7 |
| Associated Families | 7 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 4 |
| All Organisms → cellular organisms → Eukaryota | 1 |
| All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa → Kinetoplastea → Metakinetoplastina → Neobodonida → Neobodo → Neobodo designis | 1 |
| All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → research facility → soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Iowa | |||||||
| Coordinates | Lat. (o) | 42.0 | Long. (o) | -93.0 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005470 | Metagenome / Metatranscriptome | 399 | Y |
| F009606 | Metagenome / Metatranscriptome | 315 | Y |
| F034478 | Metagenome / Metatranscriptome | 174 | Y |
| F035602 | Metagenome / Metatranscriptome | 171 | Y |
| F057456 | Metagenome / Metatranscriptome | 136 | N |
| F083663 | Metagenome / Metatranscriptome | 112 | Y |
| F098404 | Metagenome / Metatranscriptome | 103 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0256795_1029834 | Not Available | 1502 | Open in IMG/M |
| Ga0256795_1060807 | Not Available | 982 | Open in IMG/M |
| Ga0256795_1065009 | Not Available | 943 | Open in IMG/M |
| Ga0256795_1077035 | Not Available | 843 | Open in IMG/M |
| Ga0256795_1089859 | All Organisms → cellular organisms → Eukaryota | 760 | Open in IMG/M |
| Ga0256795_1106106 | All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa → Kinetoplastea → Metakinetoplastina → Neobodonida → Neobodo → Neobodo designis | 678 | Open in IMG/M |
| Ga0256795_1107771 | All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff | 671 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0256795_1029834 | Ga0256795_10298341 | F035602 | VKGFQKEFIDRDYIEALNWYETGAMQYDSICLFRLHEIYIGDTHFKVPYDERQALCHLIYSALLSQFEIFDTKVSFWQKFEAFWKKESSKTAYIQELLISPSADYFVATGGLFSKLFTFYATKNNFPEILPELKNLSTDILKTKFFSIINAMFDFLAYTYNSGFSKVDLQKYVDTILDMLTNDILFDNFFQNYITHIKLLKAKKKFAHVFQRRLETDCFWVWSFSFLVSMKNYYLAVLQSYDETFSDGSLVLKWKNTASWVNNFVGFCNEKGIGTTKDANKALEAYDRDMREMPRVLFSRFRHILIRKQAMTNSQQPFQEESDPQLEAEVTELKSMIEGRFEDQNRMDCYLYYVYGKVYEKIDEDIDTAIQWYQKGVDSDTESCLKNHLLCNEGWRMKCDKRLQKLKMKKGLQTLIINKNQED |
| Ga0256795_1060807 | Ga0256795_10608071 | F057456 | AFPIIQDLSLLCLVILCPAYATVRLVGGQTVKQDLAIKLGKYHT |
| Ga0256795_1065009 | Ga0256795_10650091 | F034478 | REEAEPVGNFLSQCRIDSISLWFLRTDNQNVALQGICSSYKKLNEDNFFESFESVDDKIKNSDRDYDIVHFDDGEYIKAINITEASANGKIGAIEFVTTNKGRKVLAYGSANANAEEGKQAEPLPPGETKTFDFLKSEGENFPGYVVGFFGQYDENHITYLGVYVAPLTEVNYYARRAYILTYKKLQQDKNLINDIAKKLGVEKEGERFKDANLEDADNNSSRIFLYFLDASLNHPELFKAVLEYL |
| Ga0256795_1077035 | Ga0256795_10770351 | F009606 | ATSKTGSDGAGRGPNVIRTKAKPKVNPVSGANFEYVNESRIGDSFVVCMAGPSGVQSFTFHHPIGSADVDDEDWVCTPTGDIPSLLGRQEDPDEPDRKAKREKYRLDLCVTAGLLMKADGDGRLMYPDTGIIRQDALAAARAAAKDAVKADKGKPSPDLYIRFMDASVQEKESEVRKFLASPKTIRSAETKFPGTGFLTRGGPLADRDQKAVSYLTGKTRSQAQDAVTKRIFGLDEDEE |
| Ga0256795_1089859 | Ga0256795_10898591 | F005470 | QISISANMSAINLRKEGQVITEFPPNLIKRSRLLTKLVEEFSSTEVDLEPAPGKDFSPATINKLKEFIVRFESGLPKLPKKPLLIFVTYNDWLDNNFPEDTREWLEEFFKPKSFYDLVELFNAAFYLQIDDLREICAARIAHSIILERKAPEDFLRDFGIVTSYQDFFTPEEEAKFIEKEFINKNDYEGVAAEDDEELNKE |
| Ga0256795_1106106 | Ga0256795_11061061 | F083663 | MGGAFLLFLSLFLICNVSCQTPTPPTKPVWPDQFIATFGLNIADSNIKNASSFFYSNWEIKAQLVDYPYQCIPFNDAAATQPCKIWFLPAGAYISIPDQDVCCLWFPGVGAVPPNFLAPFNYTGVIESVQDQYGQNHTCYRWEGDGFAYWTEVKTGFDIQFRDGPGDTFWNFGEFTDAPQDPSLFALPKGCGGTCPGSISHDPALLQTDYFFFL |
| Ga0256795_1107771 | Ga0256795_11077711 | F098404 | CLSIFRLTHTVMRSFLVCVVLALAIACAAAQQTRPKLSETFESKGFVQIKHNGTLFFGEGWFHVSQPDGKALEAYAFGGAEHLNVYELQRFDKGKAFEIIHDVKKPICHTKPLTGKMPQLWDWVEKADYVRNFTANGSKFDLWGYKTAGITLEVAVPVGYPSILAYFGRFSAGNEFSYYIEQWKTDKPHSTWFEIPRECHLGSQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |