NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300027417

3300027417: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A1-10 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300027417 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095510 | Gp0072024 | Ga0207543
Sample NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A1-10 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size13688398
Sequencing Scaffolds9
Novel Protein Genes9
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1
Not Available4
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationWisconsin, United States
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007536Metagenome / Metatranscriptome349Y
F011257Metagenome293Y
F014308Metagenome / Metatranscriptome264Y
F019922Metagenome / Metatranscriptome227N
F022685Metagenome / Metatranscriptome213N
F030545Metagenome185Y
F034995Metagenome173N
F059229Metagenome / Metatranscriptome134N
F079387Metagenome116Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207543_100001All Organisms → cellular organisms → Bacteria2103Open in IMG/M
Ga0207543_100109All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium875Open in IMG/M
Ga0207543_100300Not Available723Open in IMG/M
Ga0207543_100328All Organisms → cellular organisms → Bacteria713Open in IMG/M
Ga0207543_101018All Organisms → cellular organisms → Bacteria572Open in IMG/M
Ga0207543_101462Not Available531Open in IMG/M
Ga0207543_101680Not Available516Open in IMG/M
Ga0207543_101748Not Available512Open in IMG/M
Ga0207543_101934All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes504Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207543_100001Ga0207543_1000012F007536CLVNERFRERIQVLPLAGKCRCVGRSGRNGLTNILFPLTPAPPRPSPRASPLGRGARVEELTCFVNMRLAMDMLNLHLRLIRSALGQKAGAKPMGLPHRERSQGRAAMHGHEVASLPGEMGPPLGQSHERASPFLAKFGLSASLTTGRDAAHAVSGAPMALVLPATTSCIQYVRFTDEVPRRLVPVGRVNPGYKSHTKSRGHASETGTAFPRPRLKGCQQRQSRGARLRLAEGACSERQNLRVLLGPLGFMGPVSPTNAATKWRDGTSSRQLAGLLSNSPQQPKPGQAAVRSR
Ga0207543_100109Ga0207543_1001092F019922VSLALAGCDRNQSQTPQQSTINQTPSAHSQTKALRAASAIGYDGKQLEKQVDRVLEQKQKRDGDLEKALDDTGPQ
Ga0207543_100300Ga0207543_1003001F030545FHRLGLLVAAIILIAGLLLMAKDALGVRFWDLIPADIPILAGGIAIGLTGIGLVSLAAYGIVRAVGWAIDKSV
Ga0207543_100328Ga0207543_1003281F011257DFTPAKIQMRLPGLVWGGIAMEAGLGRKRLVFLRYIQLGKIRAAARVGCPF
Ga0207543_101018Ga0207543_1010181F059229HKDGRTHIVLGRATPSSSDRGSVTFSIVTDDARIVFNTSYHFPAPPP
Ga0207543_101462Ga0207543_1014621F034995MTKILALIAGIFLIGFPAWMMKEMSVPLPEYRKGGYADYVLLAYELLAVYGSVLLGIAVHVGRAKWSGQSLFPFGLFKAGMWGVLVAASAYFVAGGVYGLISYGAFDKVIGGTLWGLLAIFWGVFGALVSAGLA
Ga0207543_101680Ga0207543_1016801F022685MEPRINLMKAILGLCLGLALMAALQTVGVWSLQEHIKSQSDAGLPIGNTPVITNFDADALKNGILPKYGPIDTREGQRLAIEGAARRIDLQNRAVQKYLPR
Ga0207543_101748Ga0207543_1017481F014308MTFMAGSTIGIQLIMPKTGTSPKETPEQQASERDAAIQPVLKAPPPPG
Ga0207543_101934Ga0207543_1019341F079387MNNSIRPRKSEQGGARLKFLIVAAILGSVAYAGYQLIPVFYRDYQIKDLMQNDVDTAANLGKPASWIKDQLVKNSAEYGIPDDAIITPEVQEDKRMEVRVQFTLPVEFPGF
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