Sample 3300027449

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300027449

3300027449: Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G10K5-12 (SPAdes)

Overview

Basic Information
IMG/M Taxon OID	3300027449 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095510 \| Gp0072125 \| Ga0207531
Sample Name	Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G10K5-12 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	3885450
Sequencing Scaffolds	3
Novel Protein Genes	3
Associated Families	3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	USA: Michigan
Coordinates	Lat. (^o)	42.4	Long. (^o)	-85.37	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001436	Metagenome / Metatranscriptome	695	Y
F017236	Metagenome / Metatranscriptome	242	Y
F058266	Metagenome	135	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207531_100287	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
Ga0207531_100402	Not Available	590	Open in IMG/M
Ga0207531_100709	Not Available	504	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207531_100287	Ga0207531_1002871	F001436	ELLKLAAEQWPHANCEISQTDLFHRNQSLLEMWPEACRRAGVGGRDFPSGVIKLWKQGAGRVN
Ga0207531_100402	Ga0207531_1004022	F058266	MNNDRLLVVFVVLYLIVIVALLFKDAPRPVAPEVKTPVAKVETAPIAKEDKPDAARPQADDGGKPGATPNCEKELRRTADLLRFFANRIQGGEDAQSVVADMRQQ
Ga0207531_100709	Ga0207531_1007091	F017236	MQHLPKQAVFLGRGLQARFDCCYQPLPDELNVLLWFLDGAERRGHIQATLNARQRVKLDLPADVHWMPADQVPEARADWRGHERHFESLRRAIDFVMQELTIADRANVTITTEDGNLTIE

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