Sample 3300027953

Overview

Basic Information
IMG/M Taxon OID	3300027953 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114432 \| Gp0296284 \| Ga0256908
Sample Name	Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0761-MT (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	281168160
Sequencing Scaffolds	4
Novel Protein Genes	4
Associated Families	4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa → Kinetoplastea → Metakinetoplastina → Neobodonida → Neobodo → Neobodo designis	1
Not Available	2
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → research facility → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	USA: Iowa
Coordinates	Lat. (^o)	42.0	Long. (^o)	-93.0	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F003289	Metagenome / Metatranscriptome	495	Y
F071833	Metagenome / Metatranscriptome	121	Y
F083663	Metagenome / Metatranscriptome	112	Y
F098404	Metagenome / Metatranscriptome	103	N

Family

Category

Number of Sequences

3D Structure?

F003289

Metagenome / Metatranscriptome

495

F071833

Metagenome / Metatranscriptome

121

F083663

Metagenome / Metatranscriptome

112

F098404

Metagenome / Metatranscriptome

103

Scaffold	Taxonomy	Length	IMG/M Link
Ga0256908_1113904	All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa → Kinetoplastea → Metakinetoplastina → Neobodonida → Neobodo → Neobodo designis	659	Open in IMG/M
Ga0256908_1114222	Not Available	657	Open in IMG/M
Ga0256908_1123098	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff	622	Open in IMG/M
Ga0256908_1150466	Not Available	536	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0256908_1113904

All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa → Kinetoplastea → Metakinetoplastina → Neobodonida → Neobodo → Neobodo designis

659

Open in IMG/M

Ga0256908_1114222

Not Available

657

Open in IMG/M

Ga0256908_1123098

All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff

622

Open in IMG/M

Ga0256908_1150466

Not Available

536

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0256908_1113904	Ga0256908_11139041	F083663	FLLFLSLFLICNVSCQTPTPPTKPVWPDQFIATFGLNIADSNIKNASSFFYSNWEIKAQLVDYPYQCIPFNDAAATQPCKIWFLPAGAYISIPDQDVCCLWFPGVGAVPPNFLAPFNYTGVIESVQDQYGQNHTCYRWEGDGFAYWTEVKTGFDIQFRDGPGDTFWNFGEFTDAPQDPSLFALPKGCGGTCPGSISHDPALLQTDYFFFL
Ga0256908_1114222	Ga0256908_11142221	F003289	XGNIVTEVALQTNFGVGFNNTQSDVLIHLTQXQYWXXFXFSFLXAFYYLVILRIIRFRTLKFRPRLATTYRPHGKXGDLIICLIPISWCVNIITNSSFILRMIEXQAETGLLTIRIRGKQWYXIYKFELKTFTDILTVPKNVGRNKXQISTPGDLQVADDYLHILQLRSQNKXVKKYXNDLSQKFYRNKNFHLISPQEQLKFNFYQNLTNYEFLKNSK
Ga0256908_1123098	Ga0256908_11230981	F098404	CVVLALAIACAAAQQTRPKLSETFESKGFVQIKHNGTLFFGEGWFHVSQPDGKALEAYAFGGAEHLNVYELQRFDKGKAFEIIHDVKKPICHTKPLTGKMPQLWDWVEKADYVRNFTANGSKFDLWGYKTAGITLEVAVPVGYPNILAYFGRFSAGNEFSYYVEQWKTDKPHSTWFEIPRECHLGSQ
Ga0256908_1150466	Ga0256908_11504661	F071833	EPFEKLSKENVECYNLERGTLEGKPQYFERVNKCLDSWQRHFERVESNTNQYLSKLREKEASHFSKLFHCSNAIDDPEIQACRKEENERFANELKDTFSQL

Scaffold ID

Protein ID

Family

Sequence

Ga0256908_1113904

Ga0256908_11139041

F083663

FLLFLSLFLICNVSCQTPTPPTKPVWPDQFIATFGLNIADSNIKNASSFFYSNWEIKAQLVDYPYQCIPFNDAAATQPCKIWFLPAGAYISIPDQDVCCLWFPGVGAVPPNFLAPFNYTGVIESVQDQYGQNHTCYRWEGDGFAYWTEVKTGFDIQFRDGPGDTFWNFGEFTDAPQDPSLFALPKGCGGTCPGSISHDPALLQTDYFFFL

Ga0256908_1114222

Ga0256908_11142221

F003289

XGNIVTEVALQTNFGVGFNNTQSDVLIHLTQXQYWXXFXFSFLXAFYYLVILRIIRFRTLKFRPRLATTYRPHGKXGDLIICLIPISWCVNIITNSSFILRMIEXQAETGLLTIRIRGKQWYXIYKFELKTFTDILTVPKNVGRNKXQISTPGDLQVADDYLHILQLRSQNKXVKKYXNDLSQKFYRNKNFHLISPQEQLKFNFYQNLTNYEFLKNSK

Ga0256908_1123098

Ga0256908_11230981

F098404

CVVLALAIACAAAQQTRPKLSETFESKGFVQIKHNGTLFFGEGWFHVSQPDGKALEAYAFGGAEHLNVYELQRFDKGKAFEIIHDVKKPICHTKPLTGKMPQLWDWVEKADYVRNFTANGSKFDLWGYKTAGITLEVAVPVGYPNILAYFGRFSAGNEFSYYVEQWKTDKPHSTWFEIPRECHLGSQ

Ga0256908_1150466

Ga0256908_11504661

F071833

EPFEKLSKENVECYNLERGTLEGKPQYFERVNKCLDSWQRHFERVESNTNQYLSKLREKEASHFSKLFHCSNAIDDPEIQACRKEENERFANELKDTFSQL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300027953: Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0761-MT (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences