Sample 3300028080

3300028080: Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepA_8d (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300028080 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133460 \| Gp0294613 \| Ga0256324
Sample Name	Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepA_8d (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	111195014
Sequencing Scaffolds	38
Novel Protein Genes	50
Associated Families	43

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1
All Organisms → cellular organisms → Bacteria	1
Not Available	26
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Limnocylindria → Candidatus Aquidulcis → unclassified Candidatus Aquidulcis → Candidatus Aquidulcis sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater river biome → river → river water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: New York
Coordinates	Lat. (^o)	45.0061	Long. (^o)	-74.7949	Alt. (m)	N/A	Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000191	Metagenome / Metatranscriptome	1666	Y
F000344	Metagenome / Metatranscriptome	1257	Y
F003666	Metagenome / Metatranscriptome	474	Y
F007472	Metagenome / Metatranscriptome	350	N
F007746	Metagenome / Metatranscriptome	345	Y
F014976	Metagenome / Metatranscriptome	258	Y
F016262	Metagenome / Metatranscriptome	248	Y
F020340	Metagenome / Metatranscriptome	224	Y
F023532	Metagenome / Metatranscriptome	209	N
F025267	Metagenome / Metatranscriptome	202	N
F025295	Metagenome / Metatranscriptome	202	Y
F025755	Metagenome / Metatranscriptome	200	Y
F025923	Metagenome / Metatranscriptome	199	Y
F025928	Metagenome / Metatranscriptome	199	N
F026478	Metagenome / Metatranscriptome	197	Y
F029333	Metagenome / Metatranscriptome	188	Y
F031495	Metagenome / Metatranscriptome	182	Y
F032540	Metagenome / Metatranscriptome	179	N
F036098	Metagenome / Metatranscriptome	170	N
F039170	Metagenome / Metatranscriptome	164	Y
F043769	Metagenome / Metatranscriptome	155	Y
F044151	Metagenome / Metatranscriptome	155	Y
F045549	Metagenome / Metatranscriptome	152	N
F063363	Metagenome / Metatranscriptome	129	N
F065719	Metagenome / Metatranscriptome	127	N
F071251	Metagenome / Metatranscriptome	122	Y
F076857	Metagenome / Metatranscriptome	117	N
F078235	Metagenome / Metatranscriptome	116	N
F079635	Metagenome / Metatranscriptome	115	N
F079651	Metagenome / Metatranscriptome	115	N
F079652	Metagenome / Metatranscriptome	115	Y
F082737	Metagenome / Metatranscriptome	113	Y
F083748	Metagenome / Metatranscriptome	112	N
F086641	Metagenome / Metatranscriptome	110	N
F088419	Metagenome / Metatranscriptome	109	N
F089854	Metagenome / Metatranscriptome	108	N
F091400	Metagenome / Metatranscriptome	107	N
F091401	Metagenome / Metatranscriptome	107	N
F095365	Metagenome / Metatranscriptome	105	Y
F097215	Metagenome / Metatranscriptome	104	N
F097454	Metatranscriptome	104	Y
F101029	Metagenome / Metatranscriptome	102	N
F102558	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0256324_1000591	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5062	Open in IMG/M
Ga0256324_1001428	All Organisms → cellular organisms → Bacteria	3634	Open in IMG/M
Ga0256324_1009008	Not Available	1607	Open in IMG/M
Ga0256324_1010243	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1510	Open in IMG/M
Ga0256324_1010854	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1468	Open in IMG/M
Ga0256324_1017592	Not Available	1131	Open in IMG/M
Ga0256324_1019364	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1073	Open in IMG/M
Ga0256324_1021711	Not Available	1007	Open in IMG/M
Ga0256324_1022747	Not Available	980	Open in IMG/M
Ga0256324_1023530	Not Available	961	Open in IMG/M
Ga0256324_1023692	Not Available	957	Open in IMG/M
Ga0256324_1023699	All Organisms → cellular organisms → Eukaryota	957	Open in IMG/M
Ga0256324_1028706	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	855	Open in IMG/M
Ga0256324_1029699	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	838	Open in IMG/M
Ga0256324_1032041	Not Available	802	Open in IMG/M
Ga0256324_1039689	Not Available	707	Open in IMG/M
Ga0256324_1040697	Not Available	697	Open in IMG/M
Ga0256324_1040853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei	695	Open in IMG/M
Ga0256324_1043065	Not Available	675	Open in IMG/M
Ga0256324_1045748	Not Available	652	Open in IMG/M
Ga0256324_1048149	Not Available	632	Open in IMG/M
Ga0256324_1050888	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	611	Open in IMG/M
Ga0256324_1053483	Not Available	594	Open in IMG/M
Ga0256324_1053718	Not Available	593	Open in IMG/M
Ga0256324_1057606	Not Available	569	Open in IMG/M
Ga0256324_1057821	Not Available	568	Open in IMG/M
Ga0256324_1060582	Not Available	553	Open in IMG/M
Ga0256324_1062270	Not Available	544	Open in IMG/M
Ga0256324_1062319	Not Available	543	Open in IMG/M
Ga0256324_1063181	Not Available	539	Open in IMG/M
Ga0256324_1064789	Not Available	531	Open in IMG/M
Ga0256324_1066106	Not Available	525	Open in IMG/M
Ga0256324_1066831	Not Available	522	Open in IMG/M
Ga0256324_1067453	Not Available	519	Open in IMG/M
Ga0256324_1067571	Not Available	519	Open in IMG/M
Ga0256324_1068298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Limnocylindria → Candidatus Aquidulcis → unclassified Candidatus Aquidulcis → Candidatus Aquidulcis sp.	516	Open in IMG/M
Ga0256324_1068603	Not Available	514	Open in IMG/M
Ga0256324_1071748	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	501	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0256324_1000591	Ga0256324_10005911	F045549	INPLEQLRALRTEVIDRERTRVRGLLDEVSTSEQETSGETTTPEPSVPTAEDSEAASERKPRKGKAVRRPAALEGEELKIRLGTELRRLVAQQCHTDGWSVNDLVSSVLRSALSARSPSIWHGGTALATANVCRFWHRHPMDTALRLTSDKGVFLITTNPASPLFKHWKEHYTLLGMPDCDRMARQMRLIQLQEWVQSVDDFDVDDWRKPLSEEDYMVTRAVVSQQDAPTDAASRDDETSPSSSSP
Ga0256324_1001428	Ga0256324_10014281	F063363	SDRHERNRSNPDGLMRMNLISMHSASITLGKDLQGQSIYLRWFLQEHPLERQCLLNMYPASRRWLVRMLLSTRWISLLETEINVAAALTGINSQDRSNTLKSISDAYLRRPIPSGFPRWVLRILNADPLLLGK
Ga0256324_1001994	Ga0256324_10019941	F000191	LAASGYTVGNLVNQHVRFIETGEKDPLMTYEKALITQSRALEIPEFD
Ga0256324_1003301	Ga0256324_10033012	F000191	AASGYTVGNLVNQHVRFIETGEKDPLMTYEKALITQSRPEEIPPID
Ga0256324_1007134	Ga0256324_10071342	F000191	GNLVNQHVRFIETGEKDPLMTYEKALITQSRAGEIPLID
Ga0256324_1009008	Ga0256324_10090081	F007746	GEKQINRFPRRVRIHGGEFGESARAIHRIESERSDSSRVREIPKLD
Ga0256324_1009927	Ga0256324_10099272	F000191	GNLVNQHVRFIESGEKDPLMTYGKALITQSRPGEIPPID
Ga0256324_1010243	Ga0256324_10102431	F076857	MSEIREKLQDVERGLASLNDVHVGREIDVDKKSTFDPAEAYAVQRELRKKLSQMSTTELNEMLDVQASTQAGKQADSAVLNQLAMSNPAIAKALDSSAGTALIRQDLEPILYSLFVKKFPFFERIRKEPANGLVHAFNQQTAYGDAVFQTETGTVTDDNATYVRQTTNVAVLATRRGITLKNQFALGAGGSPFNGLSQELGSGVTAIANKLQKTLFQGNATVTTGASSSTELGAYDANSFDGLRKLLGTAAAAGNEIVGKGTASYLSTINTAVAGVLDNGGNPSAIVCTPTDYAGLVNELTNLVRYNAPSQVDQLAGATFGSVVTAAGSLPILAVPGDAIGAYAISGTDYRDMYVVDEAGWSMPYLGSDSITTLEIPIGVNGALTRLYIMYVMQGFANKAPQFQAKIRVTA
Ga0256324_1010854	Ga0256324_10108541	F097454	MLSKVKVQRLPRASRVLVARSLFRGAVATQSLVMPVETSSTTRIFRRHFGAGHIKTVSLSAAESVVPPFPTAIIYNQSKHASGSVLADIRAVWGNKIRVLQTVETGLHPLPGVDGAIFIPPKTWGDMKTFGKALDSSCALDHGLKRHRNEKRVVFMAGWSAFAESHEAAVAVTKLGLVWPGTEPKASARLEKIGFKNICRQVGAPTPNFVVLSEEGDQKNLNDPVVKEAVIQQYMAAVAAMKSHEKGLIKSIHGGGGKGTAHLDNPQDPEQVRAAIQKVFNEMGRSDGIYFEEKVNTKGDGRFFQLEIEVDGSTVAHGGRFVWFNSRLQKVVEIGLSDAHIPRFMPQDLYQKARAWSSEIARVAGNNTRATMEALVFQDENGDFQCYFIECNRRPQVENEALALLQLDASGNRRYTFAELMMRAKGHPAPNFLPTPANGPQVVLHARILH
Ga0256324_1013026	Ga0256324_10130262	F000191	SGYTVGNLVNRHVRFIETGEKDPLMTYEKALITQSRGWEIPEFD
Ga0256324_1017592	Ga0256324_10175921	F079635	VTMAGTDPYYIDTDPEEAEGVVRPGYVRVMCWQNSACLQIREDVINQSQLMNFLASARPAENLSECIHLQNQLASADNVRLICDWLAKHIEFQSRDAPAEERRAFDQRFFLLNPAGHAAYDSAPNDQAKSDILDSRKDWLRWREDNEENEDPKRLSVDPSNKRTPKFQRTGPVEARLHRTYEEIQHVMFVANFLELHPTDWHVEFAKKEAERIAAQPPGPFQEYGLDPADKFAETVMELCCHHLGDMILGCESPVDMQHRFPTLIGAKALTAKDRYDIVTADLWIHGDDFVEKVVPELQAQQRAEFAKAKAEGMSDPDIEAKFGKPIPDWTLESTQDERAFMKEVPGQEANPTLRVPAIKINDQQPADEGFEIGHH
Ga0256324_1019364	Ga0256324_10193641	F076857	GKQASNDVLNRLAVANPNIAKLLDSSGGTALIRQDLEPMLYSLFVKRFPFFERIRKEPANGLVHAFNQQTAYGDAVFQTETGTVTDDSATYSRQTTNVAVLATRRGITLKNQFALGQGGSPFNGLSTELAGGVTAIAGKLQKTLFQGNADTTASAGTATELGAYDANGFTGLRKLLGSGTSAEIVTKATSESYLSNINEVVAGILDNGGNPSAILLSPTDYANFVNELTSLVRFNAPSQQGQVAGATFASVATANGVLPLLAVPGDSIGSYTLSSVNYRDMYVVDEDTWSMPYLGTDSITTLEIPIGVNGALTRLYIMYVMFGLGAKAPQFNGKIRVVTA
Ga0256324_1021711	Ga0256324_10217111	F091400	MIWPGSNGQVAQGTDCDAQETPADEHADDSTWLCTPLHVCTQLAMAVLVPEPQELEQGVNGATLHENVGQQGRAGHGWVWEVHAAPHIDAGTVEPLPGPEMVVHVATLILEPACPQVAEQEPWRLYVHEYSEQIGTVQGDVWVWQPPGQFDAAVGGEGPPHRFWAMHEEVERRTPVHVLGGCVGDGVGGTVTHDGSVYLQALPGTSTGAGVASKLISKVVRWVKTVGFVASAWPMVLRTMPRNALSWSSS
Ga0256324_1022747	Ga0256324_10227472	F025267	MELTIKPLELGGGYKYRMLDMLCVEALEIGIVRMLLKRQQLFSTGYGVSASLNATFFALVLARFEPLLIFFAEKQRWLQGVSIPQKA
Ga0256324_1023530	Ga0256324_10235301	F078235	ARPPPLDCGSSKATLFQLLPRDQAAPQQVIGSENHTQKTLSKSHGMHIDFHQTSGSKAQLRRSRSVKKQKTIKRLGSRPRAVHRWTLFPTLGGLALAVGLRSADIRVETPGGQHNFLFNGTNAGTLTLVRGQTYTFDVDTSSQHPFQIQSPGVVNNEINTGQLTYTVPTNNASYIYVCPIHPWMFGDIFTIPPPEVRILSLELGTDVVLSSTLIPDWKLQAEFATNLYQGEWSVLPIATNRVSSNRVDSICGRPEGDSIFIRLKASR
Ga0256324_1023692	Ga0256324_10236922	F086641	MKSKTLSTAVGVLLVAVLFVVMQLPRTHALPEGYTDTYFPRGGHRYLIAPGGVKKVGQEVVNYQVVGTVVTGTVRLRLEHDDVRTFRLDLKTHTVSLGDRVQEDAR
Ga0256324_1023699	Ga0256324_10236991	F007472	IQLGKMVYFTYKKLNICTVALLASVFAILIAAMAVDWYSYKVEFSYTRVASSDTSLASTLYNYTQTNFDMFGQTVNVQTANNNKIVRTTQQTYAQLGATNVNQQFKIQQAFVLIALLTAGLLFVAHTLYFFDGFRNKILFFVGITALRTILIISLLIVVSAEIIAFLAFLGLSDKIASDSPNCLTGPCQKFSDTVTTQLGVNALTIGNEASVLATLQSVATWGPTAGWYLVLATIPLTVLATIIVVINRFPIPVDSLGTGEAL
Ga0256324_1028706	Ga0256324_10287061	F000344	MRPRHPHAAESGVGKHTARESESAKACADGEERVANAHSRSMRMSRSRHETE
Ga0256324_1029699	Ga0256324_10296991	F032540	MARGSVAVVPELGLATGADQLGGRSLRKRVVVAVVMLALGCVAVALAVASASGDAELRDTSVLKVGVSDRLDVWRQYENDEDINPRKKTGPKADWEKQRSIPDFVDGIIGPSPTAMDEGGGKSRGSFNVQKITDKTDFYYLRVSDRSGNGDRIRAELVGSDGYRLDWVGFGEIFTGPIHEGNLGETDYLRVEDLITGEEQFFRFRF
Ga0256324_1031265	Ga0256324_10312651	F039170	WDNAHFDIQPHTYWGEIVLVQHKRMGGGDIEVQTATVPWFHNSWSESQHHQGGPKGNTGLAIAAWGNVIVFYARNHLGSYFLNGNQVTWHNHGWTTIAQGIQCAKSGGHYNFLIDKGTGYLRIWGQIYSQNMCVYGHASGSWATGKSLTGAWADWNGDAGNDQAIINQLNAQGKLSVLNTPRSYFSNKAPRSNTNGQFMLAFDMELDESQSRIIPGETITMDIQEPAKQCPDKADIIAQNCKGVFGGALKDCGADICLGVTPAEAGSDAHK
Ga0256324_1032041	Ga0256324_10320411	F025295	DHGNWPGKATELLRRREVLIPEKLKLTTRKRNLLKPI
Ga0256324_1039689	Ga0256324_10396891	F088419	DIYGVPLMNNKLICFGALSLLMISGSFAQAGTKPKGQRQAKVRTIDASDIETALKGMTLSAEQNAKVADLVKNFLSGVNGTLTPEQQDQLKTALEKAIAPKSPADNLITSLSAAVTLTPEQELKVKPMVEETLKAMRDKTKGLEANERKQVTEQSMSDLKTALRGVLTTDQQAKLDGWKPSMRGRAQGQPGPGAAGKKPGKP
Ga0256324_1040697	Ga0256324_10406971	F091401	NYTQTNFDMFGQTVHVQGANTKIVRTTQQTYAQLGASNVNQQFKIQQAFVLIALLTAGLLFVAHTLYFFDGFRNKILFFVGITALRTILVIALLVVVASEIIAFLAFLGLSDKIASDSPNCLSGPCQKFADSVTTQLGQSTLAIGSESAAAVSLQQVANWGPTAGWYLVLATIPLTVLATIIVVINRFPIPVDSLGTGEAL
Ga0256324_1040853	Ga0256324_10408531	F025923	SHKRSGLKNAAEGTAGIIPGDRGMVDGNWCRPSLLRAKAA
Ga0256324_1041658	Ga0256324_10416581	F025928	MSLLNGKKGKDLGFSDFVSSAVRGLFMPYFSLPIILLGVGVGYATDLVLKPLLVDGFENAGQLGAAAGPIATASGISIVTGIFIAVYGQVYGILATSAKTGTPTIGEAFALIGQRGLSVFAAGLLVTLATVGIFIVGLVVVIGGAFAANAGGVTTGLFILFLVVYLYLTMRLGQAGWFAADGMGAIDAVKASWNRTQGHLLKILFWSLGGAFVFAAVGALI
Ga0256324_1043065	Ga0256324_10430651	F095365	QDVKENYLSYTDFKAKLCKPCTPFWVWLAGGAVVGYSLKK
Ga0256324_1043065	Ga0256324_10430652	F016262	MIKFNKSTLTEIAGLGAGAVAGSYVSQKVLTKADGTYLVGTGAAGKLIAELAPVAVGLLLQGQSNTFAKEAGKGMIAQAAGGFIKSQFPALGITGDGDYSDATLLSGMDTGVDNPMISGDGNMVAPSIGAAYFILKPGKK
Ga0256324_1045748	Ga0256324_10457481	F020340	ARDGGNNVLTGSDNTNSGTDHVTVTVLEATGSVVDANLLGTKVLQLSGGARTFADLGLQGDAGTHFRLHFSYNTLTVESNEFNVKPHHMHVSVHPSDGQYGSGASKADIGAGITVQARDGGNNVLTGADNTNAGSDTVVVTVLEASGSVLDANLLGTKGLFLSTGARTFADLGLQGDAGTHFRLRFTYNTLTVESNEFNVKPNHMHVSVHPSDGQYG
Ga0256324_1048149	Ga0256324_10481491	F044151	ALYFLEPMLLEPGLGTLAGERDHLASDEPNASLPSPT
Ga0256324_1050888	Ga0256324_10508882	F031495	MTEIPVLDLHGVTHDDVMLIVEEWAIMWDYRVLGFQGKIITGNSTKMKTLAVSALKKHKFDYQLMGDGSILVSGTI
Ga0256324_1053483	Ga0256324_10534831	F083748	DDAEAKLIFQGVLEGFVSKELPDVMACVHDSTTTVADFKAAVADFETKTIDGIAKGLRETADGLTALKAAMADCKAAESEVQSLAAALAQMSSPSKLVYHVGKELLVNGKDILALVEGAVTQYKAGAYEGFGKDLGAIVADLVGKPIAPPSVGATVGDDAEAKLIFQGVLEGFVSKELPDVMACVHDSTTTVADFKA
Ga0256324_1053718	Ga0256324_10537181	F079652	RVEGCIEKLQLTLRQGNWTVVDEVIQEMRDNINDAKAFIQQEPLGHNEINTY
Ga0256324_1056619	Ga0256324_10566192	F000191	NLVNQHVRFIETGEKDPLMTYEKALITQSRTGEMPPID
Ga0256324_1057606	Ga0256324_10576061	F079651	TVRLKRGRSVTIMANPRRRARRSSGGRMGGNILSQVKGVFSKENLTVAGGGVAATVLTNFILSRTKADGTSLLPMPATNAAAAKIAYAIAIPVVGAILTRKMNPSLARGMVFGGLINGIVEAIKGYAPVETKKALGFAEYLEYTPMSALNGTPGYSAINQFSNVRPMNSAFANSSAFPADAWGR
Ga0256324_1057821	Ga0256324_10578211	F082737	SVSARSPTCMPGLSPSHPARRTSLRLAPRLRNFSVGASLLSGTPASLPVRSRNFEADFHSPTTTSLLPDRHDGVRVPALPLQLRGTLSVGPVRFDLHPRPVSRTAWGLLQSKPVAFRSCATPACLVESSLPFRVSTLPDQSTRSRWPTGNLLPGTPDLPSLPTGGRIRYQHQRIIVPAPLRLCQLAVP
Ga0256324_1057848	Ga0256324_10578481	F102558	KMYEVVLVLKRLFEGQGSRSQAVEAVTSSGLEGLEQRTLVAAALLLFEDGAGVAAGMSDRREGSHGSAAVGCAIVSEDDLQCCQNALSIFGDQSIEEVFTDDAEDFTVNVACVARAVQEAAVFSQLRPKLLKPFQGADKMYEVVLVLKRLFEGQGSRSQAVDAVTSSGLEGLEQRTLVAAALLLFEEG
Ga0256324_1059350	Ga0256324_10593501	F043769	TYSAYQNIDSDEVNNGREIANASPMTTRAIVLSPSKDINLFYTYDGVYGGEIARTAVPFLTERVVDLTGATTLAEFIDVTSGTHAVGFDVLNVGPAGRLSVAYAPNLDATQSQSSDRVYTGTAQAGMNTASGYSIGYSVTPGPIKIAAGYTKIDAKQSTTAVDPTSRTLGVTYTAADFAIGAQRTQ
Ga0256324_1060582	Ga0256324_10605821	F032540	GNMARGSVAIVPELGLATGADQLGGRSLRKRIVVAVVMLAFGCAAIALAAASASGDSKLRDTSVLKVGVSDRLDVWRQYQNDEDINPRKKKTEKADWEKQRSIPDFVDGIIGPSPTAMDEGGSKSRGSFNVKKITDKTDFYYLRISDRSGNGDRIRAELVGSDGYRLDWVGFGEIFTGPIHEG
Ga0256324_1062270	Ga0256324_10622701	F025755	ENKMNKVVKTIGVLSIASLVSTSAFSQITISGYAEVGFITGSADGTRGTATSKGLGSEFLVTVAGKGTMTNGWTYSGYQNFDTDEVGNGRDVANTNPMTTRALELSPSKDFKLFYTYDGVYGGEIARTAVPTVTERAVDMTGQSTLAEFIDVTSGGHAVGFDVLNVGPAGRLSVAYNPNL
Ga0256324_1062319	Ga0256324_10623192	F003666	VRIHGGEFGESARAIHRTESEKSGSSRTREILSID
Ga0256324_1063181	Ga0256324_10631811	F014976	MKKFNKISREKWNQLKRVADMYEAVGTQYGKNVIYDEVVVWCRDKWDNIRYSHVAVNQNW
Ga0256324_1063181	Ga0256324_10631812	F071251	MNKAFSTHVEEDINHDGFHMTFDNGATISVMFGKHTYCDQGETTAEVAVWNQNGDWYVLNEDDNHNSLIKYPDGTEVIGHCTSNMVAHIMNL
Ga0256324_1064789	Ga0256324_10647891	F089854	DNPRTGPEGKLTEGTGFIRWNKWGALRVEDVEVKDGKLELKVVGMLPTKNFLQPKGKAEPIEVRFIMQIGAAGVEQSGFSVTVAEAQTANGAFAVKDLVVTYNPPEIYMGAVFQMGKGKGIGGAFALYDGNFNGLALKGTDLEWRLGASGSKIDKVDVGFFNIQNPPWYIEGGFTV
Ga0256324_1066106	Ga0256324_10661061	F023532	ANETEADDKAPANMAGTDTLATVSTGAKPGVAPYVDIVEVVAAAAALGIVRAEMTHTMTPFKAVAVPRASFTLGEEYVAVIVPDEMAVPPLLHVAVGLLPPKEVKPDIVITSATVDDVPVNPTVMVEEAETRLLANETEADDKAPANMAGTDTLATVSTGAKPGVAPYVDIVEV
Ga0256324_1066831	Ga0256324_10668311	F029333	GVATVPPLTPLIVTPGVPVLAKKPDGYVNVMVLPIASAPPAVVVKENVAAADVLPATRSDGAIANEGLVTWPPIAPELTPDDAV
Ga0256324_1067453	Ga0256324_10674531	F036098	MERLQKQMSEEAQGLAGRVETLQAAVEQSGKESEGLLLASLMKLQEEVDGKIGAVKGEVDVQGKSMLEVLETLSAERKAADDDRKQVQTRLQGVSSDVEAVQAQSAKQAETVSGLLLKVADFEGVKPAVQADMERLQKQMSEEAQGLAGRVETLQAAVEQSGKESEGLLLAS
Ga0256324_1067571	Ga0256324_10675711	F097215	KSDEKGRYALGRFLPRRPDVRVEKNSDGSVTLHPVKRRMSRAEVEAFVSSRAGTWDGPVSGEKLLKLTRGA
Ga0256324_1068298	Ga0256324_10682981	F101029	MSLLGAKKGKELGFSDFVSSAVRGLFMPYFSLPIIVLGVAVGYATDLVLKPILVDGFANVGSIGAMAGPIATASGISIITGIFIAVYGQIYGTLATSAKAGTPTIGEAFALIGQRGLSVFAAGLLVTLATVGIFIVGLIVVIGGAIAANAGGVTTGLFILFLVVFIY
Ga0256324_1068603	Ga0256324_10686032	F065719	MELVLLLVVFAVVPIAFIVVFNRQSKKLKKIRKVSGR
Ga0256324_1071748	Ga0256324_10717481	F026478	STFAMARAVLLIAVVLSLLLVAQCSKPKRKAVALDDEEVVQAKDFALKEIIKLSDSYRDMKIAKLISAEKARSAFSDGTNFFLKMELSCVSKCEAPLSPASTCRRGKYKGTNEIIVFWKDDGHYDGIAIDEFPQMDGEFHPCTPSYKGSEKCNPAEHRTPEQAALF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300028080: Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepA_8d (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences