Sample 3300028093

Basic Information
IMG/M Taxon OID	3300028093 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133460 \| Gp0293499 \| Ga0255306
Sample Name	Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Yuk_RepC_8d (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Yuk_RepC_8d (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	93401143
Sequencing Scaffolds	29
Novel Protein Genes	31
Associated Families	27

Dataset Contents

Total Genome Size

93401143

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	21
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2
All Organisms → Viruses	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Lautropia → unclassified Lautropia → Lautropia sp.	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

All Organisms → Viruses

All Organisms → cellular organisms → Eukaryota → Cryptophyceae

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Lautropia → unclassified Lautropia → Lautropia sp.

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Ecosystem Assignment (GOLD)

Name

Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater river biome → river → river water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater river biome → river → river water

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Louisiana
Coordinates	Lat. (^o)	29.8571	Long. (^o)	-89.9778	Alt. (m)	N/A	Depth (m)	5
Location on Map

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Location Information

Location

USA: Louisiana

Coordinates

Lat. (^o)

29.8571

Long. (^o)

-89.9778

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004727	Metagenome / Metatranscriptome	426	Y
F004916	Metagenome / Metatranscriptome	418	Y
F009078	Metagenome / Metatranscriptome	323	Y
F016245	Metagenome / Metatranscriptome	248	N
F029333	Metagenome / Metatranscriptome	188	Y
F032540	Metagenome / Metatranscriptome	179	N
F042749	Metagenome / Metatranscriptome	157	N
F044315	Metagenome / Metatranscriptome	154	N
F045790	Metagenome / Metatranscriptome	152	N
F047008	Metagenome / Metatranscriptome	150	N
F052593	Metagenome / Metatranscriptome	142	Y
F054804	Metagenome / Metatranscriptome	139	N
F059663	Metatranscriptome	133	N
F060853	Metagenome / Metatranscriptome	132	N
F063745	Metagenome / Metatranscriptome	129	Y
F071977	Metagenome / Metatranscriptome	121	Y
F079635	Metagenome / Metatranscriptome	115	N
F080126	Metagenome / Metatranscriptome	115	Y
F082153	Metagenome / Metatranscriptome	113	Y
F082176	Metagenome / Metatranscriptome	113	N
F084131	Metagenome / Metatranscriptome	112	N
F086577	Metagenome / Metatranscriptome	110	Y
F086665	Metagenome / Metatranscriptome	110	N
F091401	Metagenome / Metatranscriptome	107	N
F095369	Metagenome / Metatranscriptome	105	N
F100446	Metagenome / Metatranscriptome	102	N
F101271	Metagenome / Metatranscriptome	102	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0255306_1010358	Not Available	1281	Open in IMG/M
Ga0255306_1012125	Not Available	1182	Open in IMG/M
Ga0255306_1012263	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii	1175	Open in IMG/M
Ga0255306_1013473	Not Available	1119	Open in IMG/M
Ga0255306_1013813	Not Available	1105	Open in IMG/M
Ga0255306_1014296	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1085	Open in IMG/M
Ga0255306_1017516	All Organisms → Viruses	976	Open in IMG/M
Ga0255306_1019216	Not Available	927	Open in IMG/M
Ga0255306_1021316	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	877	Open in IMG/M
Ga0255306_1022858	Not Available	843	Open in IMG/M
Ga0255306_1025315	Not Available	799	Open in IMG/M
Ga0255306_1025488	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	796	Open in IMG/M
Ga0255306_1027355	Not Available	765	Open in IMG/M
Ga0255306_1030017	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	727	Open in IMG/M
Ga0255306_1032098	Not Available	701	Open in IMG/M
Ga0255306_1035040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Lautropia → unclassified Lautropia → Lautropia sp.	669	Open in IMG/M
Ga0255306_1036455	Not Available	654	Open in IMG/M
Ga0255306_1039766	Not Available	624	Open in IMG/M
Ga0255306_1041832	Not Available	606	Open in IMG/M
Ga0255306_1042634	Not Available	600	Open in IMG/M
Ga0255306_1047170	Not Available	568	Open in IMG/M
Ga0255306_1048565	Not Available	559	Open in IMG/M
Ga0255306_1050412	Not Available	548	Open in IMG/M
Ga0255306_1054433	Not Available	525	Open in IMG/M
Ga0255306_1054441	Not Available	525	Open in IMG/M
Ga0255306_1054472	Not Available	525	Open in IMG/M
Ga0255306_1054473	Not Available	525	Open in IMG/M
Ga0255306_1055827	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	518	Open in IMG/M
Ga0255306_1058860	Not Available	504	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0255306_1010358	Ga0255306_10103581	F084131	PELKAILRNAEKTLDDDIPARAQFLTQKQEAQKLAHQMFPYLKNKETPEYVLAQQALSQMPWMRNLPNADWIIGVQIEGLKALEAKQKAKPESKPKPAMSSKPPASQSVVSSAGGDVRAPSATKAANQIEALRMQLSKKGGVTANEAAAFLLAREKAKLNR
Ga0255306_1012125	Ga0255306_10121251	F079635	DPYYPDNHPEDAQGVCNPGYVRVMCWQSSACLQIRENIVQQSQLMSYLATGREAENPSECIHMANELATADNLKIICDWLAKHIEFAGRDAPDEERRSFDRRFFLLNAAGHAAYDAASNDQEKADILDARKDWLRWRQDDPENEDPKRTKFGAQRTPPFQRQSPVEQRRHRTYEEIQQIMFVANFLELIPTQWHQDFAQKENERIAQQPPGPFQEYGLDPVDKFADSVMEICCHHLGDMILGCLSPVEMQHRFPTLIGAKVLTAKDRYDILTADLWIHGDAFVQEVVPELQALQRQEIAQAQAQGMSPEEIEKKFGQPIADWTLESTLEQRAFMKDIPGFQDKEQPIEVPAIKINPDQPPDEGFEIGAHWWG
Ga0255306_1012263	Ga0255306_10122633	F004916	MKLTWILFALMALSSLALVLATEVQEDCHPTCRWQCDDPICPAQCHPVCERPKCQVHCEETPCAQCKVHCDKPQCNVRCPKDLCEKSDCPKCETVCAPAQCRTSCVAPNAVCTPMCEETKCDWKCKKPTLCPRPKCELVCETPKCAAKPPAAPAAANTTCCACNQANLKASLIQAGEAKGVAPSFLELMNEVKFQEQQGQTPCCACNKQ
Ga0255306_1013473	Ga0255306_10134732	F004727	MKVTITYHDNQSFTVEEVVKLATDNYGRTAQVEVMPESTMAYDHIYFGLQQLVTHEQLSLLFERDASYQQDIKKLREEVLYKVTEII
Ga0255306_1013813	Ga0255306_10138131	F079635	DGYVRVMCNGRILQIREDVVNQSQCMNFLASARPADNLSECIHMANELATVENVKVICDWIAKHIEFANRNAPDDERRSFDQRFFLLNAAGHAAYAAATTDAEKADILDSRKDWLRWRVDDPTNEDPKRSKHGGQRTAPFSRGGAAPQERRHRTYEEVQHIMFVANFLELHPTDWHRTFAQAENERIAAQPPGPFQEYGLDPADKFAETVMELCCHILGDMILGCESPVDMQHRFPTLIGAKALTAKDRYDIATADLWIHGDDFLFEIVPELQEMQRQEFAAAQAEGMSAQDIEAKYGKPIPDWTYESTQEERAFMKEVPQKEPNEQLKVPAIQVNDSQEADPGFEIGHHWWG
Ga0255306_1014296	Ga0255306_10142961	F052593	MAYIYPAPGVANVELTLEIEVSGDTNALAIPALQDITINNANDVFTWTQLDSGSKFNIPTTASNSIDMNLVVDQTVFFGSGSGADVAVNKGLFGLSKDKKLISFSLYMGDTNSGSAGKTISGTGYVVGLAPTVSADSPVWITPVSITVVGDYTVA
Ga0255306_1017516	Ga0255306_10175164	F095369	MAYIIRDGELVAIPIPLNQRVKIGRYYQPPQLNYIDSDQLWIQDVYTFKQIPWYAIKNRFERYLLYGTLWFSVFVILNLIGRHYLGAP
Ga0255306_1019216	Ga0255306_10192161	F044315	MLALVVCGLVMFVNNGSARAQPVDLLQQTCPGCLAKISKKINALSVDQQHMAQQFESELTQLQQSVSKLKAEITHVNPRSGLVRVIKNDAIKTAFPAGASEAAIAVSTQSTHDPEFDESGFKKGANRARNMRDKKYGAFPNRWVDKDTVEAFADHIYGPNPTTLDRKGVEREGYFTMAKIHSGMFYYINLEGVSNHHIKLIMQGTDGYNREYEGYGSIYTGPIYDGDHGVRDYFEVQDLVSGDVEFFRFSHPWTPPAMK
Ga0255306_1021316	Ga0255306_10213161	F042749	AISHRPITTMIGATWMKYAAVPCLLLLAAVAVLYTDSSQQSAEPNLDVALVSSSQQTQSLALFKHAAIEDVYVYAGPEEHTRHLVPFICRLIKRHRFRLNIHQFFSVDDAPLRSVLWSHDSRVVIFPPFESYPQISAKGFTDLRAYVAAGNNVVFMGSYIALQVMNDAFGFSLRDDYKEGPYYRNDRNVRGTEFEYLPSRLNEPSPRVYGAMAKSLPPGGFSLYDSLGSVVVFYVRYDLGTIVYIGYQFDNPYQIDSWVRVIHAAMAM
Ga0255306_1022421	Ga0255306_10224211	F100446	GKLSVLNTPRSYFKNKTPRVNTNGQFMLAFDMELDESQSRIIPGETITMDIQEPAKQCPDKAAIIAQNCKGVFGGALKDCGADICLGVTPAEAGSDAHKGQVTTKLIKLLPQTNAEQKGDTCMLLDQLKQVDKLPRTGGKSFSFSTFIKQEGERLQGTIARKGNEWALESNDDGDVIFTSNGVSCKAPKAIGRTYKNIVAVSSATENTVKIVVDGKEACSVAGKLFTEPLDAPLNLGSISDHIQAKVAKPTYIASGVRSNEIGLFSKEKPECIGA
Ga0255306_1022858	Ga0255306_10228581	F044315	VTRSRSVLMVGAVLALAVCGVLMYVNVGGSEPVDLLQQTCPDCLAKISRKISALSSDQKNMAQQFEVELDHLQHSVSMLKSEIAHVNPRSGLVRVIKSASLTPTAAPLPSPVRSSVIVNSPVDHDSEYDESGFKKGANRAKNMRDKKYGAFPNRWVDKDTVEAFADHIYGPDPTTLDRKGVEREGYFTIAKIHSGMFYYINLEGVSNHHIKLIMQGTDGYNREYEGYGSIYTGPIYAGDHGVRDYFEVQDLVNGDVEFFRFSHPWTPPAMK
Ga0255306_1025315	Ga0255306_10253151	F045790	MMDIHELREELLEQAMEHLDCKFRTQKKFALMFFEHKLKQGVPIDNYMSYMPTIYTPEEVLGLAKAMDAYVMGGN
Ga0255306_1025488	Ga0255306_10254881	F063745	VDQLIINSINLATKPNKQPQTPIKLSPRFKALARECGFVFWQNEPHGPGPGNIDWSTDYTSEFEHYSRELVTWTCELMRQEIVRDYLFKASKNTYQHLVVQD
Ga0255306_1027355	Ga0255306_10273551	F086577	AEQMRQQATNGSVLLLGNVVDALRLPGFDSKVLNPGVAGLPDFGSFGLTDLVTEFAAPANGSSFSRLQTLGATVIATQGWTVVGDVRVVSFAFSVLIETDGAGNRKFSGSVQGSISIGRFTFGAYVPFNKPGQQMEFMLPVVTVNGVNVNELFGVGTKVGVSAADVNDLLSTDGAEIKARLKAELAQKSAELKALAKEQLRANLLAPLQELQARAEQMRQQATNGSVLLLGNVVDALRLPGFDSKVLNPGVAGL
Ga0255306_1030017	Ga0255306_10300171	F086665	TQSLALFKHAAIEDVYVYAGKEEHTRHLVPFICRLIKRHRFRLNIHQFFSVDDAPLRSVLWSHDSRVVIFPPFESYPQISSKGFTDMRAYVAAGNNLVFMGSYIALQVMNDAFGFSLRDDYKEGPYYRNDRNVRGTEFEYLPSRLNEPSPRVYGAMAKSLPPGAFSLYDSLGSVVVFYVRYDLGTIVYIGYQFDNPYQIDSWVRVIHAAMAM
Ga0255306_1032098	Ga0255306_10320981	F071977	FKQVSNHVEKAGQAIKSEVSKHVENIGNVGKSIAGGLDKALGTDIFSKGQQFVHQHVGGGITSFVNQAVDGFSGVMNGAMKAVNDRIQSVLDPNRAQREYMNSQEYKDKMAAKNIFETFSKKLELPSNMPKYLSDSIVQWIMGEMKVTPLGKQPFLTNLNAENQCVPESAPNTCTSGDIKCIVLANKCFLDDEECVRAALKKVPMAALEQYAATHHLDFPGSSYGRYIRFSAP
Ga0255306_1035040	Ga0255306_10350402	F101271	FDFSEAIALQREALAGRDWAKLQQSIHALQQAMQHISSFPGGAEGVRKQLLASEGTARETADHLIERVMIERRSSAELIRLQLQRLQALQTMTSFEEDAGLYSETGATKGRGGRLSTWV
Ga0255306_1036455	Ga0255306_10364552	F047008	MKMTKDQKTCRKLWLEHVRESGGIVHTRPPMGDENGFCLVAMPCAYNPRHAKFYDVSFAWCADSDQFDRKVGEFIALDRQMFGQTTKLPGYIIDNMLEMDLVD
Ga0255306_1039766	Ga0255306_10397662	F091401	AFVLIALLTAGLLFVAHTLYFFDGFRNKILFFIGITALRTILIIALLVVVVAETIAFLAFLGISDKIAKDSPNCLSGPCQKFADTVTTQLGQNTLNVAGADVAVSLQQVATWGPTAGWYLVLATIPLTVLATIIVVINRFPIPVDSLGTGEAL
Ga0255306_1041832	Ga0255306_10418321	F059663	VTGSSTAASSDTLLYNRTDVTWNLQQRTTSTYFDRKATNVASTYTSDQAIFSIIKLVQAFAITALLLSGILSIYFVLVFFAGFRAKIVYSWGATGARRIAMLTSLFVVISVIIAFLATTGITQALKTDNPLCSDGPCNKFVDSQTTSLGTYTHLGVNYNMNQNMTWGPAAGWFLFLACIPLSLLLTIVAGLNNYPVPIDSIG
Ga0255306_1042634	Ga0255306_10426341	F080126	KGVMGSMIRNYATCPGTEHPTSNTATEGGTEACTPVIPYQGGTGNSTLYTYSSKGKCDVQTSAKLVSDCSALTDASGALLGLQSGPCHVTYVSSKCSGILGTDGVTPIGAGDIGFSLATLTRATFNDATNGDMTVIDFPVTFNYSTPNSGKMAVKSSSAEALIPLVGVNNADLPACTSLEIVDVSIKDPAGLPFAKLGG
Ga0255306_1047170	Ga0255306_10471701	F009078	MVHLRKPAHLREEAITDKTGSGNRDAECSGKNVGRQARKGNLGQWKVTGGADFTAKPIRLSGMGKGSVLV
Ga0255306_1048565	Ga0255306_10485651	F054804	LEPRWKPKGAGDYVVNLPCGYTDEDVKRKVELAKAVIELHNTPMWWETWLGYHVVEDNVLTDFESQQLEWDGRIDFPAEVLNV
Ga0255306_1050412	Ga0255306_10504121	F032540	RGSVAVVPELGLATGADQLGGRSLRKRIVVAVVLLAFGCAAVALAAASASTDSKLRDTSVLKVGVNDRLDVWRQYQNDEDVNPRKKKTAKADWEKQRSIPDFVDGIIGPSPTAMDEGGSKSRGSFNVKKITDKTDFYYLRITDRSGNGDRIRAELVGSDGYRLDWVGFGEIFTGPIHEGNLG
Ga0255306_1054433	Ga0255306_10544331	F016245	ALVVGLSNTVRQGTGIVMTVSFTPVDAVPNDGRFVLTLVGAGFACSAGTTVTFVSPADGSGYVSISAGLVLTLQLSGGTFSAGQAVEFVFGGVTNPISNQSHISNIHAATLNAPGNIVGASVTGYLPAIVNGLGALVVGLSNTVRQGTGIVMTVSFTPVDAVPNDGRFVLTLVGA
Ga0255306_1054441	Ga0255306_10544412	F082153	VELPAVAAPMVRPVTVTVTAVLAAIDWAAMVMTIWVLVGVATVPVGGPPPLICTPGVPVLEKKLGGYVSVMVPPVASAPPAVVVNENVAAAPVLPATRSDVAIANKALVT
Ga0255306_1054472	Ga0255306_10544721	F016245	GRLVVTLVGAGFACTAGTAVTFVSPAGGSGTVSISAGLVLTLQLSGGTFSAGSAVEFWFGGVTNPTSTQPQTNNIHAVTTTSAGVVIGGSVTGILPAIVGGLGTLRVDLSNTVRQGTGIRVTVSFTPVDAVPGDGRLVVTLVGAGFACTAGTAVTFVSPAGGSGTVSISAGLVL
Ga0255306_1054473	Ga0255306_10544731	F029333	TIWVLVGVATLPVGGPLPLICTPGVPVLEKKPAGYVSVILLPISSLPPAVVVNENVAAADVLPATRSDVAIANEGSVA
Ga0255306_1055644	Ga0255306_10556441	F082176	SLTIRHDVHEFSIDAGTVQFVPAVSVLKLSPSVVEAGTKSVLEIEVDADCDCRAGLECRVGHARAPAMCSAGPRTLRCAVVPLGAGVRALTLMMDGQLLSRGTVPVNVVESLISNVAVRPSAVDSSGGASVTVVSSACASGPSPSGGLFVRFGEEGASVFCPYPVVDGAMNSS
Ga0255306_1055827	Ga0255306_10558271	F086665	LVPFICRLIKRHRFRLNIHQFFSVDDAPLRSVLWSHDSRVVIFPPFESYPQISSKGFTDLRAYVAAGNNIVFMGSYIALQVMNDAFGFSLRDDYKEGPYYRNDRNVRGTEFEYLPSRLNEPSPRVYGAMAKSLPPGGFSLYDSLGSVVVFYVRYDLGTIVYIGYQFDNPYQI
Ga0255306_1058860	Ga0255306_10588601	F060853	KQMAVQQLLDNLYLTPAPWRKWMQTREEIIQDWKAGKDFRIQSGPYCSIRDIEYLRGSYNRIYIIHDRGSIEV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300028093: Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Yuk_RepC_8d (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences