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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300028107 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114432 | Gp0296236 | Ga0256787 |
| Sample Name | Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0938-MT (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 197275252 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 7 |
| Associated Families | 7 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 3 |
| All Organisms → cellular organisms → Eukaryota | 2 |
| All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes | 1 |
| All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → research facility → soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Iowa | |||||||
| Coordinates | Lat. (o) | 42.0 | Long. (o) | -93.0 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003289 | Metagenome / Metatranscriptome | 495 | Y |
| F005470 | Metagenome / Metatranscriptome | 399 | Y |
| F018726 | Metagenome / Metatranscriptome | 233 | Y |
| F047414 | Metagenome / Metatranscriptome | 149 | Y |
| F071833 | Metagenome / Metatranscriptome | 121 | Y |
| F096377 | Metagenome / Metatranscriptome | 104 | Y |
| F098404 | Metagenome / Metatranscriptome | 103 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0256787_1051110 | Not Available | 937 | Open in IMG/M |
| Ga0256787_1063575 | All Organisms → cellular organisms → Eukaryota | 802 | Open in IMG/M |
| Ga0256787_1080836 | All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes | 674 | Open in IMG/M |
| Ga0256787_1087676 | Not Available | 636 | Open in IMG/M |
| Ga0256787_1091262 | All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff | 619 | Open in IMG/M |
| Ga0256787_1093685 | All Organisms → cellular organisms → Eukaryota | 607 | Open in IMG/M |
| Ga0256787_1117359 | Not Available | 515 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0256787_1051110 | Ga0256787_10511101 | F003289 | EVALQTNFGVGFNNTQSDVLIHLTQXQYWWXFXFSFLXAFYYLVILRIIRFRTLKFRPRLATTYRPHGKXGDLIICLIPISWCVNIITNSSFILKMIEXQAETGLLTIRIRGKQXYXIYKFELKTFTDILTVPKNVGRNKXQISTPGDLQVADDYLHILQLRSQNKXVKKYXNDLSQKFYRNKNFHLISPQEQLKFNFYQNLTNYEFLKKF |
| Ga0256787_1063575 | Ga0256787_10635752 | F096377 | DSKHATNIFTTSLLNLIYRWKSFNVTHHKVAGKDRKYLKINNNSDLVQFQSKYKSTPLYFIPTDDNNVNIFITDNDAIINDILGQEDIIEDVVSKLFAKLDRNPTPFQEDLWLPIFSIKEKTMDLEAAKTLLKDEYKVNYATNTCTIGLNGSRVPGNLKVRPNEKSKIIEKPFLFGILHEQVDFPLFAVVVKPEDFAQHE |
| Ga0256787_1080836 | Ga0256787_10808362 | F018726 | LMLVDPVTVAAASPTPSLVLAVVRSDGYGSERVDTGANGYSVITNHTKNKGGGSRHYIQMTKSVNAVDPYSGLTKKQIASVSFTISRPSFGFTDADIIALAKALTDYRDDSEVTTARLIQFQS |
| Ga0256787_1087676 | Ga0256787_10876761 | F047414 | RMHRDSLMLSPLFSSNTHNGGFFSGFTPRYFSNVPHMQDTNKTFGPDDFLLRPSPTHMDIDVNARFEKAVENMKMELRNNPTQHLGDHGMDQQGLNLDIDLIDDSYLHAPLTKSPHLQFVGSQPTSKCSFKKFGEWTLSPNASFLPRKKF |
| Ga0256787_1091262 | Ga0256787_10912621 | F098404 | FPHTAMRSFLVCVVLALAIACAAAQQTRPKLSETFESKGFVQIKHNGTLFFGEGWYHVSQPDGKALEAYAFGGAEHLNVYELQRFDKGKAFEVIHVGHDKTPICHTKSLTGKMPQLWDWVEKADYVRNFTANGSKFDLWGYKTAGITLEVAVPVGYPDILAYFGRFSAGNEFSYYIEQWKTDKPHSTWFEIPKECHLGPK |
| Ga0256787_1093685 | Ga0256787_10936851 | F005470 | VEEFSSTEVDLEPAPGKDFSPATINKLKEFIVRFESGLPKLPKKPLLIFVTYNDWLDNNFPEDTREWLEEFFKPKSFYDLVELFNAAFYLQIDDLREICAARIAHSIILERKAPEDFLRDFGIVTSYQDFFTPEEEAKFIEKEFINKNDYEGVAAEDDEELNKE |
| Ga0256787_1117359 | Ga0256787_11173591 | F071833 | KLSKENVECYNLERGTLEGKPQYFERVNKCLDSWQRHFERVESNTNQYLSKLREKEASHFSKLFHCSNAIDDPEIQACRKEENERFANELKDTFSQL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |