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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300028183 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114432 | Gp0296287 | Ga0256911 |
| Sample Name | Metatranscriptome of enriched soil aggregate microbial communities from Iowa State University, Ames, United States - MC6-MC0764-MT (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 282844996 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 7 |
| Associated Families | 6 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata | 1 |
| Not Available | 4 |
| All Organisms → cellular organisms → Eukaryota | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Enriched Soil Aggregate → Enriched Soil Aggregate Microbial Communities From Iowa State University To Study Microbial Drivers Of Carbon Cycling |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → research facility → soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Iowa | |||||||
| Coordinates | Lat. (o) | 42.0 | Long. (o) | -93.0 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004023 | Metagenome / Metatranscriptome | 456 | Y |
| F005470 | Metagenome / Metatranscriptome | 399 | Y |
| F031726 | Metagenome / Metatranscriptome | 181 | N |
| F057456 | Metagenome / Metatranscriptome | 136 | N |
| F071833 | Metagenome / Metatranscriptome | 121 | Y |
| F104141 | Metagenome / Metatranscriptome | 100 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0256911_1006151 | All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata | 3574 | Open in IMG/M |
| Ga0256911_1060595 | Not Available | 1047 | Open in IMG/M |
| Ga0256911_1071527 | All Organisms → cellular organisms → Eukaryota | 942 | Open in IMG/M |
| Ga0256911_1126867 | Not Available | 644 | Open in IMG/M |
| Ga0256911_1147518 | Not Available | 580 | Open in IMG/M |
| Ga0256911_1172818 | All Organisms → cellular organisms → Eukaryota | 520 | Open in IMG/M |
| Ga0256911_1181771 | Not Available | 502 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0256911_1006151 | Ga0256911_10061512 | F004023 | LLLILCILFFLFHGKVYXXIFTDKNLNTDTLIRLAYGHYVSAFYMAYLGLLHGIDMHYDXKNEATYDGLEPEMSWXDEALSNELGTFIEALIVLNIICWXLYPEPEALSYEIFMXGDIGLISDVRFYGVAPHXYFRPFMAWLIVCPHHKTGIFGLIFLFFSLFHQPTLHGVNESGFFYKRRLLFTINRVKQKKFL |
| Ga0256911_1060595 | Ga0256911_10605951 | F057456 | PSVAFPIIQDLSLLCLVILCPAYATVRLVGGQTVKQDLAIKLGKYHT |
| Ga0256911_1071527 | Ga0256911_10715271 | F104141 | MQSLNILPSLLQQGHQEIDGHVDVLSEFFFSHGGDTDGGTHTEDLLQLESDGGFNFLELFFDLFVFTDSDGELADLVKGVTHKLGDLLHQGFGGEEDIERLSPLLDQFLILVELLGTIDIDATNIDLLGLVAMDGSTDKTDLSVGGGDVGESDRAVESLILFGVVVSQTNLEFNGFGELSLLSASQHVGDGLLKGFGTDLATGEGKRGGEEGSLLPHGANLKLKKF |
| Ga0256911_1126867 | Ga0256911_11268671 | F071833 | INIKQPNQKTMNLSSDYTQDPQQNINLVQILIKRKLIEPFEKLSKENVECYNLERGTLEGKPQYFERVNKCLDSWQRHFERVESNTNQYLSKLREKEASHFSKLFHCSNAIDDPEIQACRKEENERFANELKDTFSQL |
| Ga0256911_1147518 | Ga0256911_11475181 | F031726 | HLPWPIAVLLATVVLLLAAGLTAGGVGLPGADLPTLAPLAPGWVPEPGTAPRPRTWSEPGNNRLEVWEKIERDAALVIFGEEMTDAERGRGIKALALALAMNDLELSRTYTDPLLAELRQELTRQLGGEAREVLADLDERALVRALYQARTGRHSPLMIGSFRAEVGFATYRQWMTTITESRDNRREERQTLS |
| Ga0256911_1172818 | Ga0256911_11728181 | F005470 | SLPTSNMSVKVRKEGQVITEFPKEMVPRSRLLTKLVEEFSSTEVDLEPAPGKDFSPATINKVREFLAKFEKGLHKMPKKPLLIFVTYNDWLDNNFDENTREWLEEFLKPKSFYELVELFNAAFYLQIDDLREISAARIAHSIILERKAPEDFLRDFGIATQYQDFFTPEEEA |
| Ga0256911_1181771 | Ga0256911_11817711 | F071833 | NIKQPNQKTMNLSSDYTQDPQQNINLVQILIKRKLIEPFEKLSKENVECYNLERGTLEGKPQYFERVNKCLDSWQRHFERVESNTNQYLSKLREKEASHFSKLFHCSNAINDPEIQACRKEENERFANELKDTFSQL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |