NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300028235

3300028235: Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen5, Rep 2, Chloramphenicol (External Submission)



Overview

Basic Information
IMG/M Taxon OID3300028235 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118397 | Gp0242246 | Ga0302334
Sample NameEnriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen5, Rep 2, Chloramphenicol (External Submission)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size191910112
Sequencing Scaffolds6
Novel Protein Genes6
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix4
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E22

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDetermining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Large Intestine → Fecal → Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: California
CoordinatesLat. (o)34.4149Long. (o)-119.841Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046107Metagenome / Metatranscriptome151Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0302334_1029522All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix1711Open in IMG/M
Ga0302334_1030830All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix1633Open in IMG/M
Ga0302334_1035194All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E21389Open in IMG/M
Ga0302334_1045656All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix963Open in IMG/M
Ga0302334_1067575All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix551Open in IMG/M
Ga0302334_1069318All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E2534Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0302334_1029522Ga0302334_10295223F046107MYFGKLYYSGIFPFLTNKKEIKPKSNIFKIDSVVSTKLSPDSSFIELLGRDSPFVEIDDDPVLSLCLISTTSTLLVLSLVIWSTYQIIA
Ga0302334_1030830Ga0302334_10308301F046107MLYXNFPFLTNKKVIKPRSNIFKIDSVVSVKLSPDSSFIELLGRDSPFVEIDDDPVLSLFLISTTSTLLVKFGNLEYLSNNSSNELLMIGI
Ga0302334_1035194Ga0302334_10351941F046107MYFGKLYYAGIFPFLKNKKEIKPRSNIFKIDSVVSTKLSPDSSFIELLGQDSSFVEIDDDPVLSLCLISMTSTLLDKFGILQYLSNNSSNELLMIGIALV
Ga0302334_1045656Ga0302334_10456561F046107MYFGKLYYTGIFPFLTDKKEIKPRSIIFKIDSVVSTKISPDSSFIELLGLDSSFVEIDEDPVLSLCLISTTSTLLVKFGILQYLSKNSSNELLMIGIALVKNSAKPTIFGT
Ga0302334_1067575Ga0302334_10675751F046107MYFGKLYYAGIFPFLTNKKEIKPRSNIFKIDSVVSTKLSPDSSFIELLGRDSPFVEIDDALVLSLCLISTTSTLLVKFGILQYLSNNSSNELLMIGIALVKNSAKPTIFWNW
Ga0302334_1069318Ga0302334_10693181F046107NKKEIKPRSNIFKIDSVVSTKLSPDSSFIELQGRDSPFVEIDDDPVLSLCLISTTSTFLDKFGNLQYLSNNSSNELLMIGIA
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