Sample 3300028237

Overview

Basic Information
IMG/M Taxon OID	3300028237 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0118397 \| Gp0242259 \| Ga0302338
Sample Name	Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen10, Rep 2, Chloramphenicol (External Submission)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	264326577
Sequencing Scaffolds	10
Novel Protein Genes	10
Associated Families	4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	4
Not Available	4
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Aegilops → Aegilops tauschii → Aegilops tauschii subsp. strangulata	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Glomeromycotina → Glomeromycetes → Diversisporales → Diversisporaceae → Diversispora → Diversispora epigaea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
Type	Host-Associated
Taxonomy	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	USA: California
Coordinates	Lat. (^o)	34.4149	Long. (^o)	-119.841	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F002654	Metagenome / Metatranscriptome	539	Y
F046107	Metagenome / Metatranscriptome	151	Y
F098130	Metagenome / Metatranscriptome	104	Y
F105011	Metagenome / Metatranscriptome	100	N

Family

Category

Number of Sequences

3D Structure?

F002654

Metagenome / Metatranscriptome

539

F046107

Metagenome / Metatranscriptome

151

F098130

Metagenome / Metatranscriptome

104

F105011

Metagenome / Metatranscriptome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0302338_1002612	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	7935	Open in IMG/M
Ga0302338_1003325	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	7161	Open in IMG/M
Ga0302338_1020258	Not Available	2442	Open in IMG/M
Ga0302338_1024925	Not Available	1995	Open in IMG/M
Ga0302338_1025140	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	1978	Open in IMG/M
Ga0302338_1044796	Not Available	1005	Open in IMG/M
Ga0302338_1045907	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	976	Open in IMG/M
Ga0302338_1046273	Not Available	967	Open in IMG/M
Ga0302338_1055192	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Aegilops → Aegilops tauschii → Aegilops tauschii subsp. strangulata	783	Open in IMG/M
Ga0302338_1055549	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Glomeromycotina → Glomeromycetes → Diversisporales → Diversisporaceae → Diversispora → Diversispora epigaea	778	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0302338_1002612

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix

7935

7161

Not Available

2442

Open in IMG/M

Ga0302338_1024925

Not Available

1995

1978

Not Available

1005

976

Not Available

967

Open in IMG/M

Ga0302338_1055192

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Aegilops → Aegilops tauschii → Aegilops tauschii subsp. strangulata

783

Open in IMG/M

Ga0302338_1055549

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Glomeromycotina → Glomeromycetes → Diversisporales → Diversisporaceae → Diversispora → Diversispora epigaea

778

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0302338_1002612	Ga0302338_10026121	F046107	MYFGKLYYAGIFLFLTNKKEIKPRCNIFKIDSVVSTKLSPDLSFIELLGRDSPFVEIDDDPVLSLCLISTTSMLLVKFGILQYLSNNSSNELLMI
Ga0302338_1003325	Ga0302338_10033256	F046107	RSNIFKIDSVVSTKLSPDSSFIELLGQDSSFVEIDDDPVLSLCLISTTSTLLDKFGIFQYLSNNSSNELLMIGIALVKNSAKPTIFGTGDSDINKIIM
Ga0302338_1020258	Ga0302338_10202582	F046107	MKKKKKIKPKSKIFKIDSVVSTELFPDSSFIELLRRDSAFVEMDDDPALSLCLINATLTLLVKFGSLEYLSINSSNELLMIGITLVKKLRYSAKPTIFWNMVTQMNL
Ga0302338_1024925	Ga0302338_10249252	F105011	MLNLFEKENNDLKAKLKRSEDLRLQCLEEKMKLDLKLADVVDDHQIKMDAMRLKIKKIRKYAINQEAWYHYVVGSVITLVAILIAFFVGFKFFR
Ga0302338_1025140	Ga0302338_10251401	F046107	MYFGKLYYAGIFPFLTNKKVIKPRSNIFKIDSVVSTKLSPDSSFIELLGRDSPFVEIDDNPVLSLCLISTTSTLLVKFGNLEYLSNNSS
Ga0302338_1044796	Ga0302338_10447961	F046107	MYFGKLYYAGIFPFLTNKKEIKPKSNIFKIDSVVCTKLSLDSSFIELLGQDSPFVEKDDDPVLSLCLISTTSTLLDKFGILQ
Ga0302338_1045907	Ga0302338_10459071	F046107	MYFGKLYYAGIFPFLSNKKEIKFRSNILKIDSVVSTKLSPDSSFIELLGRESPFVVIDDNPVLSLCLISTTATLLVKFDILQYLSNNSSKN
Ga0302338_1046273	Ga0302338_10462731	F046107	MYFGKLYYAGIFPFLTNKKEIKPRSNIFKIDSVVTTKLSPDSSFIELLGRDSPFVEIDDDPVLSLCLISTTSTLLVKFGNLEYLSNNSLNEQLMIGIALVKNL
Ga0302338_1055192	Ga0302338_10551921	F098130	MPDPHPRRRLGGDDPFERRHVRDWAPPGWHWEVLPSGARNLVRNRGLVVDPELLWWQSRGPLAVQREPAPEEVVRRRVREEDEHVRRYMVALDDRFSNTWQFLQGSHPSYVPVMVPSLWVMTARGSGTGRRRPV
Ga0302338_1055549	Ga0302338_10555491	F002654	MLNYQTFNEKVVCQKGNSPEQVFKVPKFLLSESKEVFKLYNQEIGLEAAIF

Scaffold ID

Protein ID

Family

Sequence

Ga0302338_1002612

Ga0302338_10026121

F046107

MYFGKLYYAGIFLFLTNKKEIKPRCNIFKIDSVVSTKLSPDLSFIELLGRDSPFVEIDDDPVLSLCLISTTSMLLVKFGILQYLSNNSSNELLMI

Ga0302338_1003325

Ga0302338_10033256

F046107

RSNIFKIDSVVSTKLSPDSSFIELLGQDSSFVEIDDDPVLSLCLISTTSTLLDKFGIFQYLSNNSSNELLMIGIALVKNSAKPTIFGTGDSDINKIIM

Ga0302338_1020258

Ga0302338_10202582

F046107

MKKKKKIKPKSKIFKIDSVVSTELFPDSSFIELLRRDSAFVEMDDDPALSLCLINATLTLLVKFGSLEYLSINSSNELLMIGITLVKKLRYSAKPTIFWNMVTQMNL

Ga0302338_1024925

Ga0302338_10249252

F105011

MLNLFEKENNDLKAKLKRSEDLRLQCLEEKMKLDLKLADVVDDHQIKMDAMRLKIKKIRKYAINQEAWYHYVVGSVITLVAILIAFFVGFKFFR

Ga0302338_1025140

Ga0302338_10251401

F046107

MYFGKLYYAGIFPFLTNKKVIKPRSNIFKIDSVVSTKLSPDSSFIELLGRDSPFVEIDDNPVLSLCLISTTSTLLVKFGNLEYLSNNSS

Ga0302338_1044796

Ga0302338_10447961

F046107

MYFGKLYYAGIFPFLTNKKEIKPKSNIFKIDSVVCTKLSLDSSFIELLGQDSPFVEKDDDPVLSLCLISTTSTLLDKFGILQ

Ga0302338_1045907

Ga0302338_10459071

F046107

MYFGKLYYAGIFPFLSNKKEIKFRSNILKIDSVVSTKLSPDSSFIELLGRESPFVVIDDNPVLSLCLISTTATLLVKFDILQYLSNNSSKN

Ga0302338_1046273

Ga0302338_10462731

F046107

MYFGKLYYAGIFPFLTNKKEIKPRSNIFKIDSVVTTKLSPDSSFIELLGRDSPFVEIDDDPVLSLCLISTTSTLLVKFGNLEYLSNNSLNEQLMIGIALVKNL

Ga0302338_1055192

Ga0302338_10551921

F098130

MPDPHPRRRLGGDDPFERRHVRDWAPPGWHWEVLPSGARNLVRNRGLVVDPELLWWQSRGPLAVQREPAPEEVVRRRVREEDEHVRRYMVALDDRFSNTWQFLQGSHPSYVPVMVPSLWVMTARGSGTGRRRPV

Ga0302338_1055549

Ga0302338_10555491

F002654

MLNYQTFNEKVVCQKGNSPEQVFKVPKFLLSESKEVFKLYNQEIGLEAAIF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300028237: Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen10, Rep 2, Chloramphenicol (External Submission)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences